{"id":"https://openalex.org/W2159938295","doi":"https://doi.org/10.1093/bioinformatics/bts630","title":"XiP: a computational environment to create, extend and share workflows","display_name":"XiP: a computational environment to create, extend and share workflows","publication_year":2012,"publication_date":"2012-10-25","ids":{"openalex":"https://openalex.org/W2159938295","doi":"https://doi.org/10.1093/bioinformatics/bts630","mag":"2159938295","pmid":"https://pubmed.ncbi.nlm.nih.gov/23104885"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts630","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/137/49060286/bioinformatics_29_1_137.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/137/49060286/bioinformatics_29_1_137.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025220924","display_name":"Masao Nagasaki","orcid":"https://orcid.org/0000-0002-4292-8785"},"institutions":[{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Masao Nagasaki","raw_affiliation_strings":["1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067767544","display_name":"Andr\u00e9 Fujita","orcid":"https://orcid.org/0000-0002-7756-7051"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Fujita","raw_affiliation_strings":["1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049465469","display_name":"Yayoi Sekiya","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yayoi Sekiya","raw_affiliation_strings":["1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079013346","display_name":"Ayumu Saito","orcid":null},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ayumu Saito","raw_affiliation_strings":["1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028000595","display_name":"Emi Ikeda","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]},{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Emi Ikeda","raw_affiliation_strings":["1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369876","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-8014-6848"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Chen Li","raw_affiliation_strings":["1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933","https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088167618","display_name":"Satoru Miyano","orcid":"https://orcid.org/0000-0002-1753-6616"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Satoru Miyano","raw_affiliation_strings":["1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933","https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5025220924"],"corresponding_institution_ids":["https://openalex.org/I201537933","https://openalex.org/I4210136366","https://openalex.org/I74801974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2689,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5941265,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"29","issue":"1","first_page":"137","last_page":"139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7524615526199341},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7471151947975159},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6623578667640686},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.641247034072876},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.602938175201416},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5978245735168457},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5587215423583984},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5262545347213745},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5106080174446106},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5060378909111023},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.49536383152008057},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4563617408275604},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4499536156654358},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4376451075077057},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.4353472590446472},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.432010293006897},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.28309494256973267}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7524615526199341},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7471151947975159},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6623578667640686},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.641247034072876},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.602938175201416},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5978245735168457},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5587215423583984},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5262545347213745},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5106080174446106},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5060378909111023},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.49536383152008057},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4563617408275604},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4499536156654358},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4376451075077057},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.4353472590446472},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.432010293006897},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.28309494256973267},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts630","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/137/49060286/bioinformatics_29_1_137.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23104885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23104885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:002344560","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1093/bioinformatics/bts630","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da USP (Biblioteca Digital da Produ\u00e7\u00e3o Intelectual)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.903.7989","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.903.7989","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/10/25/bioinformatics.bts630.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2527664","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3530915","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts630","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/29/1/137/49060286/bioinformatics_29_1_137.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G12401395","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G3601516360","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8044579487","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320336716","display_name":"Institute of Medical Science, University of Tokyo","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2159938295.pdf","grobid_xml":"https://content.openalex.org/works/W2159938295.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W188614979","https://openalex.org/W1621944069","https://openalex.org/W1976746127","https://openalex.org/W2100827887","https://openalex.org/W2103953991","https://openalex.org/W2123663722","https://openalex.org/W2128374023","https://openalex.org/W2136482257","https://openalex.org/W2147546613","https://openalex.org/W2148523353","https://openalex.org/W2155570949","https://openalex.org/W2171594815","https://openalex.org/W2582743722","https://openalex.org/W2972770296","https://openalex.org/W6636766374","https://openalex.org/W6678222360"],"related_works":["https://openalex.org/W2046765700","https://openalex.org/W4384345686","https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W2357937784","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2547618384","https://openalex.org/W4394391052","https://openalex.org/W2390396596"],"abstract_inverted_index":{"XiP":[0],"is":[1],"open":[2],"source,":[3],"freely":[4],"available":[5],"under":[6],"the":[7],"Lesser":[8],"General":[9],"Public":[10],"License":[11],"(LGPL)":[12],"and":[13],"can":[14],"be":[15],"downloaded":[16],"from":[17],"http://xip.hgc.jp.":[18]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
