{"id":"https://openalex.org/W2131285434","doi":"https://doi.org/10.1093/bioinformatics/bts594","title":"Network-based inference from complex proteomic mixtures using SNIPE","display_name":"Network-based inference from complex proteomic mixtures using SNIPE","publication_year":2012,"publication_date":"2012-10-11","ids":{"openalex":"https://openalex.org/W2131285434","doi":"https://doi.org/10.1093/bioinformatics/bts594","mag":"2131285434","pmid":"https://pubmed.ncbi.nlm.nih.gov/23060611"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts594","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts594","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3115/18530721/bts594.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3115/18530721/bts594.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037034183","display_name":"David P. Nusinow","orcid":"https://orcid.org/0000-0002-7819-5261"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David P. Nusinow","raw_affiliation_strings":["Division of Genetics, Brigham and Women's Hospital, Boston, MA 02115, USA","Division of Genetics, Brigham and Women's Hospital, Boston, MA, 02115, USA"],"affiliations":[{"raw_affiliation_string":"Division of Genetics, Brigham and Women's Hospital, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Division of Genetics, Brigham and Women's Hospital, Boston, MA, 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019170764","display_name":"Adam Kie\u017cun","orcid":"https://orcid.org/0000-0002-6634-1073"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Kiezun","raw_affiliation_strings":["Division of Genetics, Brigham and Women's Hospital and","1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"Division of Genetics, Brigham and Women's Hospital and","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080685676","display_name":"Daniel J. O\u2019Connell","orcid":"https://orcid.org/0000-0002-4742-683X"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J. O\u2019Connell","raw_affiliation_strings":["1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082238803","display_name":"Joel M. Chick","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel M. Chick","raw_affiliation_strings":["Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111407884","display_name":"Yingzi Yue","orcid":null},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yingzi Yue","raw_affiliation_strings":["Division of Genetics, Brigham and Women's Hospital and","1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"Division of Genetics, Brigham and Women's Hospital and","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110569418","display_name":"Richard L. Maas","orcid":null},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard L. Maas","raw_affiliation_strings":["Division of Genetics, Brigham and Women's Hospital and","1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"Division of Genetics, Brigham and Women's Hospital and","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079793809","display_name":"Steven P. Gygi","orcid":"https://orcid.org/0000-0001-7626-0034"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven P. Gygi","raw_affiliation_strings":["Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068462201","display_name":"Shamil Sunyaev","orcid":"https://orcid.org/0000-0001-5715-5677"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shamil R. Sunyaev","raw_affiliation_strings":["Division of Genetics, Brigham and Women's Hospital and","1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA"],"affiliations":[{"raw_affiliation_string":"Division of Genetics, Brigham and Women's Hospital and","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"1Division of Genetics, Brigham and Women\u2019s Hospital and 2Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA","institution_ids":["https://openalex.org/I1283280774"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5037034183"],"corresponding_institution_ids":["https://openalex.org/I1283280774"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1305,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.75621335,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"23","first_page":"3115","last_page":"3122"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7432326078414917},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6325029730796814},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3767617344856262},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30665215849876404},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2687191069126129}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7432326078414917},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6325029730796814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3767617344856262},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30665215849876404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2687191069126129}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014070","descriptor_name":"Tooth","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014070","descriptor_name":"Tooth","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014070","descriptor_name":"Tooth","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts594","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts594","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3115/18530721/bts594.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23060611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23060611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2826922","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3509492","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts594","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts594","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3115/18530721/bts594.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1652256240","display_name":null,"funder_award_id":"RL1DE019021","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6527187419","display_name":null,"funder_award_id":"P30-HD18655","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7060403047","display_name":null,"funder_award_id":"P50-NS40828","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320338403","display_name":"Common Fund","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131285434.pdf","grobid_xml":"https://content.openalex.org/works/W2131285434.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1418224","https://openalex.org/W229097380","https://openalex.org/W1587026990","https://openalex.org/W1968403457","https://openalex.org/W1973268693","https://openalex.org/W2002795454","https://openalex.org/W2011356131","https://openalex.org/W2012626734","https://openalex.org/W2022895946","https://openalex.org/W2038122249","https://openalex.org/W2042404226","https://openalex.org/W2068481474","https://openalex.org/W2074330253","https://openalex.org/W2081098333","https://openalex.org/W2091879895","https://openalex.org/W2094129019","https://openalex.org/W2098979213","https://openalex.org/W2106608030","https://openalex.org/W2107363136","https://openalex.org/W2107578201","https://openalex.org/W2113613985","https://openalex.org/W2117327695","https://openalex.org/W2122683221","https://openalex.org/W2123101621","https://openalex.org/W2123830992","https://openalex.org/W2130147841","https://openalex.org/W2136514583","https://openalex.org/W2143538182","https://openalex.org/W2150646520","https://openalex.org/W2159767718","https://openalex.org/W2170949754"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
