{"id":"https://openalex.org/W2170675156","doi":"https://doi.org/10.1093/bioinformatics/bts579","title":"Gene set analysis for self-contained tests: complex null and specific alternative hypotheses","display_name":"Gene set analysis for self-contained tests: complex null and specific alternative hypotheses","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2170675156","doi":"https://doi.org/10.1093/bioinformatics/bts579","mag":"2170675156","pmid":"https://pubmed.ncbi.nlm.nih.gov/23044539"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts579","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts579","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3073/50695256/bioinformatics_28_23_3073.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3073/50695256/bioinformatics_28_23_3073.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049848588","display_name":"Yasir Rahmatallah","orcid":"https://orcid.org/0000-0002-8176-6328"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Y. Rahmatallah","raw_affiliation_strings":["Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA. yrahmatallah@uams.edu"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA. yrahmatallah@uams.edu","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057625030","display_name":"Frank Emmert\u2010Streib","orcid":"https://orcid.org/0000-0003-0745-5641"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"F. Emmert-Streib","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5063692315","display_name":"Galina Glazko","orcid":"https://orcid.org/0000-0002-0570-5304"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G. Glazko","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5049848588"],"corresponding_institution_ids":["https://openalex.org/I79620101"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2101,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.78699188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"23","first_page":"3073","last_page":"3080"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/null","display_name":"Null (SQL)","score":0.6707698106765747},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5869892835617065},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48661646246910095},{"id":"https://openalex.org/keywords/null-hypothesis","display_name":"Null hypothesis","score":0.4865792989730835},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4780231714248657},{"id":"https://openalex.org/keywords/alternative-hypothesis","display_name":"Alternative hypothesis","score":0.4391302168369293},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.41661351919174194},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34437090158462524},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.31894052028656006},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.307361900806427},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25877702236175537},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1269853711128235}],"concepts":[{"id":"https://openalex.org/C203763787","wikidata":"https://www.wikidata.org/wiki/Q371029","display_name":"Null (SQL)","level":2,"score":0.6707698106765747},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5869892835617065},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48661646246910095},{"id":"https://openalex.org/C191988596","wikidata":"https://www.wikidata.org/wiki/Q628374","display_name":"Null hypothesis","level":2,"score":0.4865792989730835},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4780231714248657},{"id":"https://openalex.org/C120577422","wikidata":"https://www.wikidata.org/wiki/Q843558","display_name":"Alternative hypothesis","level":3,"score":0.4391302168369293},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.41661351919174194},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34437090158462524},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.31894052028656006},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.307361900806427},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25877702236175537},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1269853711128235}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts579","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts579","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3073/50695256/bioinformatics_28_23_3073.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23044539","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23044539","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2826961","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3509490","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts579","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts579","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/23/3073/50695256/bioinformatics_28_23_3073.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.6899999976158142,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G3330673997","display_name":null,"funder_award_id":"EP/H048871/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320310058","display_name":"University of Arkansas","ror":"https://ror.org/05jbt9m15"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170675156.pdf","grobid_xml":"https://content.openalex.org/works/W2170675156.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1983463159","https://openalex.org/W2002719914","https://openalex.org/W2011292888","https://openalex.org/W2021129827","https://openalex.org/W2026012474","https://openalex.org/W2026341138","https://openalex.org/W2027390033","https://openalex.org/W2027895157","https://openalex.org/W2045770126","https://openalex.org/W2047329948","https://openalex.org/W2058358568","https://openalex.org/W2076685053","https://openalex.org/W2081098333","https://openalex.org/W2095900642","https://openalex.org/W2105022693","https://openalex.org/W2108539496","https://openalex.org/W2110065044","https://openalex.org/W2123106337","https://openalex.org/W2127293185","https://openalex.org/W2130666470","https://openalex.org/W2133465414","https://openalex.org/W2134736660","https://openalex.org/W2134955300","https://openalex.org/W2135009704","https://openalex.org/W2137409194","https://openalex.org/W2138133187","https://openalex.org/W2144227498","https://openalex.org/W2145065092","https://openalex.org/W2157795344","https://openalex.org/W2159482845","https://openalex.org/W2159835316","https://openalex.org/W2164665487","https://openalex.org/W2167119716","https://openalex.org/W2171397614","https://openalex.org/W4294107304","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2903799831","https://openalex.org/W4306992803","https://openalex.org/W2365638861","https://openalex.org/W4306992794","https://openalex.org/W2348480869","https://openalex.org/W4306992806","https://openalex.org/W2485444738","https://openalex.org/W1999826675","https://openalex.org/W2979681497","https://openalex.org/W2369782938"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
