{"id":"https://openalex.org/W2137219425","doi":"https://doi.org/10.1093/bioinformatics/bts539","title":"SAPIN: A framework for the structural analysis of protein interaction networks","display_name":"SAPIN: A framework for the structural analysis of protein interaction networks","publication_year":2012,"publication_date":"2012-09-06","ids":{"openalex":"https://openalex.org/W2137219425","doi":"https://doi.org/10.1093/bioinformatics/bts539","mag":"2137219425","pmid":"https://pubmed.ncbi.nlm.nih.gov/22954630"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts539","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts539","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038474427","display_name":"Jae\u2010Seong Yang","orcid":"https://orcid.org/0000-0001-9910-3170"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jae-Seong Yang","raw_affiliation_strings":["1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962","https://openalex.org/I11932220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015200434","display_name":"Anne Campagna","orcid":null},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Anne Campagna","raw_affiliation_strings":["1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962","https://openalex.org/I11932220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085029107","display_name":"Javier Delgado","orcid":"https://orcid.org/0000-0003-1302-5445"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier Delgado","raw_affiliation_strings":["1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962","https://openalex.org/I11932220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040791838","display_name":"Peter Vanhee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Peter Vanhee","raw_affiliation_strings":["1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962","https://openalex.org/I11932220"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080707475","display_name":"Lu\u00eds Serrano","orcid":"https://orcid.org/0000-0002-5276-1392"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Luis Serrano","raw_affiliation_strings":["1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962","https://openalex.org/I11932220"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013287255","display_name":"Christina Kiel","orcid":"https://orcid.org/0000-0001-8454-6008"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Christina Kiel","raw_affiliation_strings":["1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"1 EMBL/CRG, Design of Biological Systems, Systems Biology Research Unit, Centre for Genomic Regulation (CRG), UPF, 08003 Barcelona, Spain and 2ICREA, Pg. Llu\u00eds Companys 23, 08010 Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962","https://openalex.org/I11932220"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5038474427"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I4210137962"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5253,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.65692113,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"28","issue":"22","first_page":"2998","last_page":"2999"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.5986531972885132},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4421650469303131},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39694151282310486},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.3679635524749756},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3400189280509949},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31080326437950134},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1143743097782135}],"concepts":[{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.5986531972885132},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4421650469303131},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39694151282310486},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.3679635524749756},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3400189280509949},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31080326437950134},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1143743097782135}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts539","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts539","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22954630","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22954630","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1980800453","https://openalex.org/W1987604884","https://openalex.org/W2009405916","https://openalex.org/W2012223636","https://openalex.org/W2039063819","https://openalex.org/W2050721857","https://openalex.org/W2071843796","https://openalex.org/W2085037886","https://openalex.org/W2098949725","https://openalex.org/W2102822797","https://openalex.org/W2107249189","https://openalex.org/W2126064524","https://openalex.org/W2128888818","https://openalex.org/W2141885858","https://openalex.org/W2142678478","https://openalex.org/W2150066952","https://openalex.org/W2153187042","https://openalex.org/W2160232999","https://openalex.org/W2162128823","https://openalex.org/W2162172965","https://openalex.org/W2612240612","https://openalex.org/W4210623056"],"related_works":["https://openalex.org/W2099982459","https://openalex.org/W1987705964","https://openalex.org/W2109298101","https://openalex.org/W2414873431","https://openalex.org/W2172097289","https://openalex.org/W4384303460","https://openalex.org/W1987363726","https://openalex.org/W2133294187","https://openalex.org/W1982038138","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"Online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
