{"id":"https://openalex.org/W2165331324","doi":"https://doi.org/10.1093/bioinformatics/bts486","title":"MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data","display_name":"MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data","publication_year":2012,"publication_date":"2012-07-31","ids":{"openalex":"https://openalex.org/W2165331324","doi":"https://doi.org/10.1093/bioinformatics/bts486","mag":"2165331324","pmid":"https://pubmed.ncbi.nlm.nih.gov/22851531"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts486","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts486","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3467742","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043068354","display_name":"Miguel Rojas\u2010Chert\u00f3","orcid":"https://orcid.org/0000-0002-4659-1446"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Miguel Rojas-Chert\u00f3","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079606674","display_name":"Michael Van Vliet","orcid":"https://orcid.org/0000-0002-5034-5766"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michael van Vliet","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046564913","display_name":"Julio E. Peironcely","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Julio E. Peironcely","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060631447","display_name":"Ronnie van Doorn","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ronnie van Doorn","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005190961","display_name":"Maarten Kooyman","orcid":"https://orcid.org/0000-0002-9023-5617"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Maarten Kooyman","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060658334","display_name":"Tim te Beek","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Tim te Beek","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057299218","display_name":"Marc A. van Driel","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marc A. van Driel","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076255429","display_name":"Thomas Hankemeier","orcid":"https://orcid.org/0000-0001-7871-2073"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Thomas Hankemeier","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011648806","display_name":"Theo Reijmers","orcid":null},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210101928","display_name":"Netherlands Metabolomics Centre","ror":"https://ror.org/00zh5wn98","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210101928"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Theo Reijmers","raw_affiliation_strings":["1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden and 2Division of Analytical Biosciences, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2300 RA Leiden and 3Netherlands Bioinformatics Centre, Geert Grooteplein 28, 6525 GA Nijmegen and 4TNO Research Group Quality and Safety, P.O. Box 360, NL-3700 AJ Zeist, The Netherlands","institution_ids":["https://openalex.org/I4210101928","https://openalex.org/I2801582894","https://openalex.org/I121797337"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5011648806"],"corresponding_institution_ids":["https://openalex.org/I121797337","https://openalex.org/I2801582894","https://openalex.org/I4210101928"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3434,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.80356161,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"28","issue":"20","first_page":"2707","last_page":"2709"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8155272603034973},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.5071406364440918},{"id":"https://openalex.org/keywords/fragmentation","display_name":"Fragmentation (computing)","score":0.4997262954711914},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.46825680136680603},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.45428773760795593},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4505480229854584},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44897404313087463},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4253774881362915},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4106404185295105},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4097011387348175},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3239295780658722},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24242150783538818},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20692676305770874},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12245190143585205}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8155272603034973},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.5071406364440918},{"id":"https://openalex.org/C191015642","wikidata":"https://www.wikidata.org/wiki/Q1132459","display_name":"Fragmentation (computing)","level":2,"score":0.4997262954711914},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.46825680136680603},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.45428773760795593},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4505480229854584},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44897404313087463},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4253774881362915},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4106404185295105},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4097011387348175},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3239295780658722},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24242150783538818},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20692676305770874},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12245190143585205},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts486","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts486","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22851531","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22851531","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2463690","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3467742","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:oai-pmh.tno.nl:34514","is_oa":false,"landing_page_url":"https://resolver.tno.nl/uuid:90cdbdc2-c2ef-4fb9-a6a4-b043e7dd9bc7","pdf_url":null,"source":{"id":"https://openalex.org/S7407055233","display_name":"TNO Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 28(20), pp. 2707-2709.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:tno:oai:tudelft.nl:uuid:90cdbdc2-c2ef-4fb9-a6a4-b043e7dd9bc7","is_oa":false,"landing_page_url":"http://resolver.tudelft.nl/uuid:90cdbdc2-c2ef-4fb9-a6a4-b043e7dd9bc7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:2463690","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3467742","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6399999856948853,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320328786","display_name":"Norwegian Biodiversity Information Centre","ror":"https://ror.org/04jnzhb65"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1982793517","https://openalex.org/W2047600440","https://openalex.org/W2058673890","https://openalex.org/W2059327215","https://openalex.org/W2140929996","https://openalex.org/W2167578100","https://openalex.org/W6662359028"],"related_works":["https://openalex.org/W2357241418","https://openalex.org/W2086064646","https://openalex.org/W2119135658","https://openalex.org/W2115485936","https://openalex.org/W3022131925","https://openalex.org/W2349174110","https://openalex.org/W1597238586","https://openalex.org/W1536405386","https://openalex.org/W2326857978","https://openalex.org/W2377966044"],"abstract_inverted_index":{"UNLABELLED:":[0],"Identification":[1],"of":[2,20,55,67,71,118],"metabolites":[3,121],"using":[4],"high-resolution":[5],"multi-stage":[6],"mass":[7],"spectrometry":[8],"(MS(n))":[9],"data":[10,88],"is":[11,24,126,133],"a":[12,25],"significant":[13],"challenge":[14],"demanding":[15],"access":[16],"to":[17,30,43,93],"all":[18],"sorts":[19],"computational":[21],"infrastructures.":[22],"MetiTree":[23,85,108,125],"user-friendly,":[26],"web":[27],"application":[28],"dedicated":[29,59],"organize,":[31],"process,":[32],"share,":[33],"visualize":[34,46],"and":[35,45,53,81,100],"compare":[36],"MS(n)":[37,48,72,104],"data.":[38,105],"It":[39],"integrates":[40],"several":[41],"features":[42],"export":[44],"complex":[47],"data,":[49,73,77],"facilitating":[50],"the":[51,64,75,78,82,87,115],"exploration":[52],"interpretation":[54],"metabolomics":[56],"experiments.":[57],"A":[58],"spectral":[60,76],"tree":[61,80],"viewer":[62],"allows":[63],"simultaneous":[65],"presentation":[66],"three":[68],"related":[69],"types":[70],"namely,":[74],"fragmentation":[79,83,98],"reactions.":[84],"stores":[86],"in":[89],"an":[90],"internal":[91],"database":[92],"enable":[94],"searching":[95],"for":[96],"similar":[97],"trees":[99],"matching":[101],"against":[102],"other":[103],"As":[106],"such":[107],"contains":[109],"much":[110,122],"functionality":[111],"that":[112],"will":[113],"make":[114],"difficult":[116],"task":[117],"identifying":[119],"unknown":[120],"easier.":[123],"AVAILABILITY:":[124],"accessible":[127],"at":[128,135],"http://www.MetiTree.nl.":[129],"The":[130],"source":[131],"code":[132],"available":[134],"https://github.com/NetherlandsMetabolomicsCentre/metitree/wiki.":[136]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}