{"id":"https://openalex.org/W2098496318","doi":"https://doi.org/10.1093/bioinformatics/bts454","title":"Cell-Dock: high-performance protein\u2013protein docking","display_name":"Cell-Dock: high-performance protein\u2013protein docking","publication_year":2012,"publication_date":"2012-07-19","ids":{"openalex":"https://openalex.org/W2098496318","doi":"https://doi.org/10.1093/bioinformatics/bts454","mag":"2098496318","pmid":"https://pubmed.ncbi.nlm.nih.gov/22815362"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts454","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2394/48881255/bioinformatics_28_18_2394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2394/48881255/bioinformatics_28_18_2394.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087135746","display_name":"Carles Pons","orcid":"https://orcid.org/0000-0002-9131-9089"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carles Pons","raw_affiliation_strings":["1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084498827","display_name":"Daniel Jim\u00e9nez-Gonz\u00e1lez","orcid":"https://orcid.org/0000-0001-6064-7883"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Daniel Jim\u00e9nez-Gonz\u00e1lez","raw_affiliation_strings":["1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069966466","display_name":"Cecilia Gonz\u00e1lez-\u00c1lvarez","orcid":null},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cecilia Gonz\u00e1lez-\u00c1lvarez","raw_affiliation_strings":["1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","Polytechnic University of Catalonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"raw_affiliation_string":"Polytechnic University of Catalonia","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020803209","display_name":"Harald Servat","orcid":"https://orcid.org/0000-0002-0144-7934"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Harald Servat","raw_affiliation_strings":["1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002646112","display_name":"Daniel Cabrera-Ben\u00edtez","orcid":null},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Daniel Cabrera-Ben\u00edtez","raw_affiliation_strings":["1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","Polytechnic University of Catalonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"raw_affiliation_string":"Polytechnic University of Catalonia","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113469504","display_name":"Xavier Aguilar","orcid":null},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Xavier Aguilar","raw_affiliation_strings":["1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021117369","display_name":"Juan Fern\u00e1ndez\u2010Recio","orcid":"https://orcid.org/0000-0002-3986-7686"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Juan Fern\u00e1ndez-Recio","raw_affiliation_strings":["1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint BSC-IRB research programme in Computational Biology, Barcelona Supercomputing Center (BSC), 2Computational Bioinformatics, National Institute of Bioinformatics (INB), 3Computer Sciences Department, Barcelona Supercomputing Center (BSC), 4Computer Architecture Department, Universitat Polit\u00e8cnica de Catalunya, Barcelona 08034, Spain and 5PDC Center for High Performance Computing, KTH Royal School of Technology, Stockholm SE-100 44, Sweden","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5021117369","https://openalex.org/A5084498827"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.492,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.63140854,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"18","first_page":"2394","last_page":"2396"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7002000212669373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7002000212669373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.02669999934732914,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.02449999935925007,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.9500285387039185},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8375484943389893},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.514907717704773},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5109800100326538},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.5076028108596802},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4185033440589905},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.34310245513916016},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3266338109970093},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23252981901168823},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1960793435573578},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.18844851851463318},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.0901048481464386},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.08970937132835388}],"concepts":[{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.9500285387039185},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8375484943389893},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.514907717704773},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5109800100326538},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.5076028108596802},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4185033440589905},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.34310245513916016},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3266338109970093},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23252981901168823},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1960793435573578},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.18844851851463318},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0901048481464386},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.08970937132835388},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts454","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2394/48881255/bioinformatics_28_18_2394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22815362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22815362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts454","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts454","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2394/48881255/bioinformatics_28_18_2394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.550000011920929,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1973839971","display_name":"ENabling technologies for a programmable many-CORE","funder_award_id":"248647","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3474831318","display_name":null,"funder_award_id":"CSD2007-00050","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G4572022505","display_name":null,"funder_award_id":"2009-SGR-980","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G4673448071","display_name":"High Performance and Embedded Architecture and Compilation","funder_award_id":"217068","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5837133979","display_name":null,"funder_award_id":"TIN2007-60625","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098496318.pdf","grobid_xml":"https://content.openalex.org/works/W2098496318.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1547749660","https://openalex.org/W1968890715","https://openalex.org/W2000383223","https://openalex.org/W2014744153","https://openalex.org/W2027403155","https://openalex.org/W2036000659","https://openalex.org/W2059807497","https://openalex.org/W2063980568","https://openalex.org/W2074104861","https://openalex.org/W2078037838","https://openalex.org/W2083995470","https://openalex.org/W2105438341","https://openalex.org/W2111966042","https://openalex.org/W2128796532","https://openalex.org/W2150056503","https://openalex.org/W2153731681","https://openalex.org/W2171778773"],"related_works":["https://openalex.org/W2100436540","https://openalex.org/W3193731429","https://openalex.org/W4322500885","https://openalex.org/W2149658535","https://openalex.org/W4282913408","https://openalex.org/W1489925612","https://openalex.org/W2070163817","https://openalex.org/W3187431608","https://openalex.org/W1974422922","https://openalex.org/W4309353019"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1,107],"application":[2],"of":[3,12,17,65,95,101],"docking":[4,45,76],"to":[5,59,79],"large-scale":[6],"experiments":[7],"or":[8,127],"the":[9,18,56,62,80],"explicit":[10],"treatment":[11],"protein":[13],"flexibility":[14],"are":[15,41,133],"part":[16],"new":[19],"challenges":[20],"in":[21,44],"structural":[22],"bioinformatics":[23],"that":[24,86],"will":[25],"require":[26],"large":[27],"computer":[28],"resources":[29],"and":[30,119],"more":[31],"efficient":[32],"algorithms.":[33],"Highly":[34],"optimized":[35],"fast":[36],"Fourier":[37],"transform":[38],"(FFT)":[39],"approaches":[40],"broadly":[42],"used":[43],"programs":[46],"but":[47],"their":[48],"optimal":[49],"code":[50,109],"implementation":[51],"leaves":[52],"hardware":[53],"acceleration":[54],"as":[55],"only":[57],"option":[58],"significantly":[60],"reduce":[61],"computational":[63],"cost":[64],"these":[66],"tools.":[67],"In":[68],"this":[69],"work":[70],"we":[71],"present":[72],"Cell-Dock,":[73],"an":[74],"FFT-based":[75],"algorithm":[77],"adapted":[78],"Cell":[81],"BE":[82],"processor.":[83],"We":[84],"show":[85],"Cell-Dock":[87],"runs":[88],"faster":[89],"than":[90],"FTDock":[91],"with":[92],"maximum":[93],"speedups":[94],"above":[96],"200\u00d7,":[97],"while":[98],"achieving":[99],"results":[100],"similar":[102],"quality.":[103],"AVAILABILITY":[104],"AND":[105],"IMPLEMENTATION:":[106],"source":[108],"is":[110],"released":[111],"under":[112],"GNU":[113],"General":[114],"Public":[115],"License":[116],"version":[117],"2":[118],"can":[120],"be":[121],"downloaded":[122],"from":[123],"http://mmb.pcb.ub.es/~cpons/Cell-Dock.":[124],"CONTACT:":[125],"djimenez@ac.upc.edu":[126],"juanf@bsc.es":[128],"SUPPLEMENTARY":[129],"INFORMATION:":[130],"Supplementary":[131],"data":[132],"available":[134],"at":[135],"Bioinformatics":[136],"online.":[137]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
