{"id":"https://openalex.org/W2155446916","doi":"https://doi.org/10.1093/bioinformatics/bts449","title":"DanteR: an extensible R-based tool for quantitative analysis of -omics data","display_name":"DanteR: an extensible R-based tool for quantitative analysis of -omics data","publication_year":2012,"publication_date":"2012-07-19","ids":{"openalex":"https://openalex.org/W2155446916","doi":"https://doi.org/10.1093/bioinformatics/bts449","mag":"2155446916","pmid":"https://pubmed.ncbi.nlm.nih.gov/22815360"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2404/48883766/bioinformatics_28_18_2404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2404/48883766/bioinformatics_28_18_2404.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006728529","display_name":"Tom Taverner","orcid":"https://orcid.org/0000-0001-6118-0074"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I129801699","display_name":"University of Tasmania","ror":"https://ror.org/01nfmeh72","country_code":"AU","type":"education","lineage":["https://openalex.org/I129801699"]},{"id":"https://openalex.org/I1325736334","display_name":"Battelle","ror":"https://ror.org/01h5tnr73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1325736334"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Tom Taverner","raw_affiliation_strings":["1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1325736334","https://openalex.org/I142606810","https://openalex.org/I129801699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013624035","display_name":"Yuliya V. Karpievitch","orcid":"https://orcid.org/0000-0003-2586-3358"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I129801699","display_name":"University of Tasmania","ror":"https://ror.org/01nfmeh72","country_code":"AU","type":"education","lineage":["https://openalex.org/I129801699"]},{"id":"https://openalex.org/I1325736334","display_name":"Battelle","ror":"https://ror.org/01h5tnr73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1325736334"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Yuliya V. Karpievitch","raw_affiliation_strings":["1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1325736334","https://openalex.org/I142606810","https://openalex.org/I129801699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103103454","display_name":"Ashoka D. Polpitiya","orcid":"https://orcid.org/0000-0001-5439-1375"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I129801699","display_name":"University of Tasmania","ror":"https://ror.org/01nfmeh72","country_code":"AU","type":"education","lineage":["https://openalex.org/I129801699"]},{"id":"https://openalex.org/I1325736334","display_name":"Battelle","ror":"https://ror.org/01h5tnr73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1325736334"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Ashoka D. Polpitiya","raw_affiliation_strings":["1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1325736334","https://openalex.org/I142606810","https://openalex.org/I129801699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103415568","display_name":"Joseph N. Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I129801699","display_name":"University of Tasmania","ror":"https://ror.org/01nfmeh72","country_code":"AU","type":"education","lineage":["https://openalex.org/I129801699"]},{"id":"https://openalex.org/I1325736334","display_name":"Battelle","ror":"https://ror.org/01h5tnr73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1325736334"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Joseph N. Brown","raw_affiliation_strings":["1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1325736334","https://openalex.org/I142606810","https://openalex.org/I129801699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019742058","display_name":"Alan R. Dabney","orcid":"https://orcid.org/0000-0002-1240-4171"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I129801699","display_name":"University of Tasmania","ror":"https://ror.org/01nfmeh72","country_code":"AU","type":"education","lineage":["https://openalex.org/I129801699"]},{"id":"https://openalex.org/I1325736334","display_name":"Battelle","ror":"https://ror.org/01h5tnr73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1325736334"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Alan R. Dabney","raw_affiliation_strings":["1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1325736334","https://openalex.org/I142606810","https://openalex.org/I129801699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018692662","display_name":"Gordon Anderson","orcid":"https://orcid.org/0000-0002-7066-6161"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I129801699","display_name":"University of Tasmania","ror":"https://ror.org/01nfmeh72","country_code":"AU","type":"education","lineage":["https://openalex.org/I129801699"]},{"id":"https://openalex.org/I1325736334","display_name":"Battelle","ror":"https://ror.org/01h5tnr73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1325736334"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Gordon A. Anderson","raw_affiliation_strings":["1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1325736334","https://openalex.org/I142606810","https://openalex.org/I129801699"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023982706","display_name":"Richard Smith","orcid":"https://orcid.org/0000-0002-2381-2349"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I129801699","display_name":"University of Tasmania","ror":"https://ror.org/01nfmeh72","country_code":"AU","type":"education","lineage":["https://openalex.org/I129801699"]},{"id":"https://openalex.org/I1325736334","display_name":"Battelle","ror":"https://ror.org/01h5tnr73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1325736334"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Richard D. Smith","raw_affiliation_strings":["1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I1325736334","https://openalex.org/I142606810","https://openalex.org/I129801699"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5023982706"],"corresponding_institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I129801699","https://openalex.org/I1325736334","https://openalex.org/I142606810"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.8086,"has_fulltext":false,"cited_by_count":145,"citation_normalized_percentile":{"value":0.97215091,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"28","issue":"18","first_page":"2404","last_page":"2406"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.79108726978302},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7297972440719604},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6738038063049316},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.630142331123352},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5597230195999146},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.5358906984329224},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5336303114891052},{"id":"https://openalex.org/keywords/statistical-analysis","display_name":"Statistical analysis","score":0.43751060962677},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.437252014875412},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.4284096956253052},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.42569780349731445},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4216371774673462},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4186214804649353},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3307895064353943},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22840851545333862},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22413486242294312}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.79108726978302},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7297972440719604},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6738038063049316},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.630142331123352},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5597230195999146},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.5358906984329224},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5336303114891052},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.43751060962677},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.437252014875412},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.4284096956253052},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.42569780349731445},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4216371774673462},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4186214804649353},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3307895064353943},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22840851545333862},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22413486242294312},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2404/48883766/bioinformatics_28_18_2404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22815360","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22815360","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ecite.utas.edu.au:80409","is_oa":false,"landing_page_url":"http://ecite.utas.edu.au/80409","pdf_url":null,"source":{"id":"https://openalex.org/S4306401569","display_name":"eCite Digital Repository (University of Tasmania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129801699","host_organization_name":"University of Tasmania","host_organization_lineage":["https://openalex.org/I129801699"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Refereed Article"},{"id":"pmh:oai:europepmc.org:2765248","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3436848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/22894190","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/DanteR_An_extensible_R-based_tool_for_quantitative_analysis_of_-omics_data/22894190","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2404/48883766/bioinformatics_28_18_2404.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1999751815","https://openalex.org/W2019196704","https://openalex.org/W2096863518","https://openalex.org/W2125419939","https://openalex.org/W2126531896","https://openalex.org/W2147830145"],"related_works":["https://openalex.org/W2048180534","https://openalex.org/W4389426664","https://openalex.org/W2020940955","https://openalex.org/W2566205467","https://openalex.org/W3012616639","https://openalex.org/W3126000805","https://openalex.org/W2010064959","https://openalex.org/W2119742499","https://openalex.org/W1985266044","https://openalex.org/W2098339479"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1],"size":[2],"and":[3,20,33,48,71,120,128],"complex":[4],"nature":[5],"of":[6,13,81],"mass":[7],"spectrometry-based":[8],"proteomics":[9,38],"datasets":[10],"motivate":[11],"development":[12],"specialized":[14],"software":[15],"for":[16,36,78,91,136],"statistical":[17,32],"data":[18,39],"analysis":[19],"exploration.":[21],"We":[22,85],"present":[23],"DanteR,":[24],"a":[25,101,106],"graphical":[26],"R":[27,115,127],"package":[28,94,137],"that":[29],"features":[30],"extensive":[31],"diagnostic":[34],"functions":[35],"quantitative":[37],"analysis,":[40],"including":[41,61],"normalization,":[42],"imputation,":[43],"hypothesis":[44],"testing,":[45],"interactive":[46],"visualization":[47],"peptide-to-protein":[49],"rollup.":[50],"More":[51],"importantly,":[52],"users":[53,124],"can":[54],"easily":[55],"extend":[56],"the":[57,66,92,114,133],"existing":[58],"functionality":[59],"by":[60],"their":[62],"own":[63],"algorithms":[64],"under":[65],"Add-On":[67],"tab.":[68],"AVAILABILITY:":[69],"DanteR":[70,93,111,134],"its":[72],"associated":[73],"user":[74],"guide":[75],"are":[76],"available":[77],"download":[79],"free":[80],"charge":[82],"at":[83],"http://omics.pnl.gov/software/.":[84],"have":[86],"an":[87],"updated":[88],"binary":[89],"source":[90],"up":[95],"on":[96,132],"our":[97],"website":[98,135],"together":[99],"with":[100,113],"vignettes":[102],"document.":[103],"For":[104,118],"Windows,":[105],"single":[107],"click":[108],"automatically":[109],"installs":[110],"along":[112],"programming":[116],"environment.":[117],"Linux":[119],"Mac":[121],"OS":[122],"X,":[123],"must":[125],"install":[126],"then":[129],"follow":[130],"instructions":[131],"installation.":[138],"CONTACT:":[139],"rds@pnnl.gov.":[140]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":9}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
