{"id":"https://openalex.org/W2153811153","doi":"https://doi.org/10.1093/bioinformatics/bts443","title":"CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis","display_name":"CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis","publication_year":2012,"publication_date":"2012-07-12","ids":{"openalex":"https://openalex.org/W2153811153","doi":"https://doi.org/10.1093/bioinformatics/bts443","mag":"2153811153","pmid":"https://pubmed.ncbi.nlm.nih.gov/22789590"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2382/48881516/bioinformatics_28_18_2382.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2382/48881516/bioinformatics_28_18_2382.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100439834","display_name":"Pei Li","orcid":"https://orcid.org/0000-0001-9547-7589"},"institutions":[{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pei Li","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101822620","display_name":"Guoli Ji","orcid":"https://orcid.org/0000-0002-0474-5523"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guoli Ji","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101778771","display_name":"Min Dong","orcid":"https://orcid.org/0000-0003-2263-1877"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Dong","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018200458","display_name":"Emily Schmidt","orcid":"https://orcid.org/0000-0003-3436-4323"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Emily Schmidt","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076123115","display_name":"Douglas Lenox","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Douglas Lenox","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100729607","display_name":"Liangliang Chen","orcid":"https://orcid.org/0000-0002-9594-640X"},"institutions":[{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangliang Chen","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453218","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0002-6698-8379"},"institutions":[{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Liu","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383297","display_name":"Lin Liu","orcid":"https://orcid.org/0000-0002-4613-3998"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Liu","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436601","display_name":"Jie Zhang","orcid":"https://orcid.org/0000-0001-5290-5424"},"institutions":[{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Zhang","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101531536","display_name":"Chun Liang","orcid":"https://orcid.org/0000-0003-1996-6027"},"institutions":[{"id":"https://openalex.org/I4210097978","display_name":"Institute of Plant Protection","ror":"https://ror.org/0111f7045","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210097978","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chun Liang","raw_affiliation_strings":["1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Automation, Xiamen University, Xiamen, Fujian 361005, China, 2Department of Botany, 3Department of Computer Science and Software Engineering, Miami University, Oxford, OH 45056, USA and 4State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Science, Beijing 100193, China","institution_ids":["https://openalex.org/I4210097978","https://openalex.org/I191208505"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5101531536","https://openalex.org/A5101822620"],"corresponding_institution_ids":["https://openalex.org/I191208505","https://openalex.org/I4210097978"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5363,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.66525465,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"28","issue":"18","first_page":"2382","last_page":"2384"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7684780359268188},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7627289295196533},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6542236804962158},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6282554864883423},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44093891978263855},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3688194453716278},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36178261041641235},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.32118839025497437},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.250893235206604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25075027346611023},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15285247564315796},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.13477659225463867},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11288338899612427},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.060319870710372925}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7684780359268188},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7627289295196533},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6542236804962158},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6282554864883423},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44093891978263855},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3688194453716278},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36178261041641235},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.32118839025497437},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.250893235206604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25075027346611023},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15285247564315796},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.13477659225463867},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11288338899612427},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.060319870710372925},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2382/48881516/bioinformatics_28_18_2382.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22789590","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22789590","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2765247","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3436847","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts443","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2382/48881516/bioinformatics_28_18_2382.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G344313414","display_name":null,"funder_award_id":"61174161","funder_id":"https://openalex.org/F4320336024","funder_display_name":"Specialized Research Fund for the Doctoral Program of Higher Education of China"},{"id":"https://openalex.org/G3453060888","display_name":null,"funder_award_id":"111002","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4020255992","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4064315911","display_name":null,"funder_award_id":"2009CB118902","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G416007462","display_name":null,"funder_award_id":"17416","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5229714672","display_name":null,"funder_award_id":"61174161","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5295699077","display_name":null,"funder_award_id":"61174161","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6058138561","display_name":null,"funder_award_id":", No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6100908006","display_name":null,"funder_award_id":"111002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6258415954","display_name":null,"funder_award_id":"Chinese","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7129907147","display_name":null,"funder_award_id":"(973 Program","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G775009472","display_name":null,"funder_award_id":"1R15GM94732-1 A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8863666567","display_name":null,"funder_award_id":"and No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G96548948","display_name":null,"funder_award_id":"201103","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325434","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320336024","display_name":"Specialized Research Fund for the Doctoral Program of Higher Education of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153811153.pdf","grobid_xml":"https://content.openalex.org/works/W2153811153.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1971899779","https://openalex.org/W1993334375","https://openalex.org/W2001053145","https://openalex.org/W2092494859","https://openalex.org/W2108234281","https://openalex.org/W2123261759","https://openalex.org/W2123405262","https://openalex.org/W2128016314","https://openalex.org/W2128222086","https://openalex.org/W2145477956","https://openalex.org/W2147841875","https://openalex.org/W2160193095","https://openalex.org/W2167155938"],"related_works":["https://openalex.org/W2015535546","https://openalex.org/W1994449010","https://openalex.org/W2074936491","https://openalex.org/W1545755951","https://openalex.org/W2069489638","https://openalex.org/W4242258765","https://openalex.org/W2044103084","https://openalex.org/W2162517701","https://openalex.org/W140544075","https://openalex.org/W2736583656"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}