{"id":"https://openalex.org/W2141593186","doi":"https://doi.org/10.1093/bioinformatics/bts435","title":"MyMiner: a web application for computer-assisted biocuration and text annotation","display_name":"MyMiner: a web application for computer-assisted biocuration and text annotation","publication_year":2012,"publication_date":"2012-07-12","ids":{"openalex":"https://openalex.org/W2141593186","doi":"https://doi.org/10.1093/bioinformatics/bts435","mag":"2141593186","pmid":"https://pubmed.ncbi.nlm.nih.gov/22789588"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts435","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts435","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/17/2285/48872187/bioinformatics_28_17_2285.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/17/2285/48872187/bioinformatics_28_17_2285.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063600106","display_name":"David Salgado","orcid":"https://orcid.org/0000-0002-5905-3591"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["AU","ES","FR"],"is_corresponding":true,"raw_author_name":"David Salgado","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","ES","FR"],"is_corresponding":false,"raw_author_name":"Martin Krallinger","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054286793","display_name":"Marc Depaule","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]}],"countries":["AU","ES","FR"],"is_corresponding":false,"raw_author_name":"Marc Depaule","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114376527","display_name":"\u00c9lodie Drula","orcid":"https://orcid.org/0000-0002-9168-5214"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["AU","ES","FR"],"is_corresponding":false,"raw_author_name":"Elodie Drula","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048099130","display_name":"Ashish V. Tendulkar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","ES","FR"],"is_corresponding":false,"raw_author_name":"Ashish V. Tendulkar","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018678007","display_name":"Florian Leitner","orcid":"https://orcid.org/0000-0003-4458-504X"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","ES","FR"],"is_corresponding":false,"raw_author_name":"Florian Leitner","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111986966","display_name":"Alfonso Valencia","orcid":null},"institutions":[{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["AU","ES","FR"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045468870","display_name":"Christophe Marcelle","orcid":"https://orcid.org/0000-0002-9612-7609"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]},{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["AU","ES","FR"],"is_corresponding":false,"raw_author_name":"Christophe Marcelle","raw_affiliation_strings":["1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"],"affiliations":[{"raw_affiliation_string":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS/UI/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210120427","https://openalex.org/I56590836","https://openalex.org/I4210089594","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5063600106"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2801239119","https://openalex.org/I4210089594","https://openalex.org/I4210120427","https://openalex.org/I56590836"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7074,"has_fulltext":false,"cited_by_count":47,"citation_normalized_percentile":{"value":0.84140899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"17","first_page":"2285","last_page":"2287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8829759359359741},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7952513694763184},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5701672434806824},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5277084708213806},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.44718092679977417},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4352274537086487},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4236636459827423},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20595890283584595},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08968368172645569}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8829759359359741},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7952513694763184},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5701672434806824},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5277084708213806},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.44718092679977417},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4352274537086487},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4236636459827423},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20595890283584595},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08968368172645569}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts435","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts435","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/17/2285/48872187/bioinformatics_28_17_2285.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22789588","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22789588","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts435","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts435","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/17/2285/48872187/bioinformatics_28_17_2285.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309751","display_name":"Association Fran\u00e7aise contre les Myopathies","ror":"https://ror.org/0162y2387"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320971","display_name":"Monash University","ror":"https://ror.org/02bfwt286"},{"id":"https://openalex.org/F4320322858","display_name":"State Government of Victoria","ror":"https://ror.org/02xvc5r05"},{"id":"https://openalex.org/F4320333067","display_name":"Sixth Framework Programme","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141593186.pdf","grobid_xml":"https://content.openalex.org/works/W2141593186.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W102787101","https://openalex.org/W1644160678","https://openalex.org/W1975703503","https://openalex.org/W1981492645","https://openalex.org/W1996002274","https://openalex.org/W2091940856","https://openalex.org/W2096297868","https://openalex.org/W2100627415","https://openalex.org/W2102160502","https://openalex.org/W2112543617","https://openalex.org/W2145383760","https://openalex.org/W2169918010","https://openalex.org/W2911367289","https://openalex.org/W4285719527","https://openalex.org/W4381594492","https://openalex.org/W6600347082","https://openalex.org/W6604181502","https://openalex.org/W6636982941"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2169425537"],"abstract_inverted_index":{"http://myminer.armi.monash.edu.au.":[0]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
