{"id":"https://openalex.org/W2149025156","doi":"https://doi.org/10.1093/bioinformatics/bts391","title":"ReLiance: a machine learning and literature-based prioritization of receptor\u2014ligand pairings","display_name":"ReLiance: a machine learning and literature-based prioritization of receptor\u2014ligand pairings","publication_year":2012,"publication_date":"2012-09-03","ids":{"openalex":"https://openalex.org/W2149025156","doi":"https://doi.org/10.1093/bioinformatics/bts391","mag":"2149025156"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i569/48883820/bioinformatics_28_18_i569.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i569/48883820/bioinformatics_28_18_i569.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054406054","display_name":"Ernesto Iacucci","orcid":null},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Ernesto Iacucci","raw_affiliation_strings":["1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018411129","display_name":"L\u00e9on-Charles Tranchevent","orcid":"https://orcid.org/0000-0002-1257-4824"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"L\u00e9on-Charles Tranchevent","raw_affiliation_strings":["1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085611600","display_name":"Du\u0161an Popovi\u0107","orcid":"https://orcid.org/0000-0002-5912-0360"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Dusan Popovic","raw_affiliation_strings":["1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088991393","display_name":"Georgios A. Pavlopoulos","orcid":"https://orcid.org/0000-0002-4577-8276"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Georgios A. Pavlopoulos","raw_affiliation_strings":["1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018814006","display_name":"Bart De Moor","orcid":"https://orcid.org/0000-0002-1154-5028"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bart De Moor","raw_affiliation_strings":["1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079833473","display_name":"Reinhard Schneider","orcid":"https://orcid.org/0000-0002-8278-1618"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Reinhard Schneider","raw_affiliation_strings":["2 Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Campus Limpertsberg, 162 A, avenue de la Fa\u00efencerie, 1511 Luxembourg, Germany"],"affiliations":[{"raw_affiliation_string":"2 Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Campus Limpertsberg, 162 A, avenue de la Fa\u00efencerie, 1511 Luxembourg, Germany","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041984163","display_name":"Yves Moreau","orcid":"https://orcid.org/0000-0002-4647-6560"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yves Moreau","raw_affiliation_strings":["1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5054406054"],"corresponding_institution_ids":["https://openalex.org/I99464096"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4034,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.63268519,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"18","first_page":"i569","last_page":"i574"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7950140237808228},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.650753378868103},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.6217241287231445},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5799999237060547},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5470439195632935},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5084656476974487},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4755503833293915},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4279884696006775},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3288482427597046},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22192123532295227}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7950140237808228},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.650753378868103},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.6217241287231445},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5799999237060547},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5470439195632935},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5084656476974487},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4755503833293915},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4279884696006775},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3288482427597046},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22192123532295227},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i569/48883820/bioinformatics_28_18_i569.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2440690","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3436818","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:orbilu.uni.lu:10993/17052","is_oa":true,"landing_page_url":"http://orbilu.uni.lu/handle/10993/17052","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 28(18), 569-i574. Oxford, United Kingdom: Oxford University Press - Journals Department (2012).","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts391","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts391","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i569/48883820/bioinformatics_28_18_i569.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3231420740","display_name":null,"funder_award_id":"postdoc","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G4407856540","display_name":null,"funder_award_id":"IWT: PhD","funder_id":"https://openalex.org/F4320327336","funder_display_name":"Vlaamse regering"},{"id":"https://openalex.org/G7993048059","display_name":null,"funder_award_id":"G.0302.07","funder_id":"https://openalex.org/F4320327336","funder_display_name":"Vlaamse regering"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322274","display_name":"iMinds","ror":"https://ror.org/03baec336"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null},{"id":"https://openalex.org/F4320338377","display_name":"FP7 Health","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149025156.pdf","grobid_xml":"https://content.openalex.org/works/W2149025156.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W156213059","https://openalex.org/W1519734172","https://openalex.org/W1556218219","https://openalex.org/W1560424863","https://openalex.org/W1811927564","https://openalex.org/W1968682237","https://openalex.org/W1982428412","https://openalex.org/W1987522618","https://openalex.org/W2001939488","https://openalex.org/W2021836043","https://openalex.org/W2026729962","https://openalex.org/W2044514479","https://openalex.org/W2048771637","https://openalex.org/W2082199132","https://openalex.org/W2084619201","https://openalex.org/W2097698606","https://openalex.org/W2106882534","https://openalex.org/W2110120447","https://openalex.org/W2111582408","https://openalex.org/W2116423958","https://openalex.org/W2122683221","https://openalex.org/W2123280311","https://openalex.org/W2124285343","https://openalex.org/W2124354935","https://openalex.org/W2131347449","https://openalex.org/W2135805255","https://openalex.org/W2147774652","https://openalex.org/W2149676146","https://openalex.org/W2149887408","https://openalex.org/W2155320925","https://openalex.org/W2155340806","https://openalex.org/W2163485494","https://openalex.org/W2164683872","https://openalex.org/W2167869241","https://openalex.org/W2170981556","https://openalex.org/W4210430020","https://openalex.org/W6606382632","https://openalex.org/W6681875201"],"related_works":["https://openalex.org/W3116896278","https://openalex.org/W4225360065","https://openalex.org/W2961085424","https://openalex.org/W4322727400","https://openalex.org/W3204641204","https://openalex.org/W4283016678","https://openalex.org/W4282839226","https://openalex.org/W4308191010","https://openalex.org/W4323021782","https://openalex.org/W4249229055"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"The":[2,95],"prediction":[3,52,67,93],"of":[4,11,22,30,64,97,108,110,155,172,182],"receptor\u2014ligand":[5,31,114,145],"pairings":[6,40],"is":[7,33,41],"an":[8,104],"important":[9],"area":[10],"research":[12],"as":[13,69,71],"intercellular":[14],"communications":[15],"are":[16,125,140,205],"mediated":[17],"by":[18],"the":[19,27,65,89,120,129,148,170,179,192],"successful":[20],"interaction":[21,51],"these":[23],"key":[24],"proteins.":[25],"As":[26],"exhaustive":[28],"assaying":[29],"pairs":[32,146],"impractical,":[34],"a":[35,45,55,62,72,152],"computational":[36],"approach":[37,58],"to":[38,47,87,142],"predict":[39,144],"necessary.":[42],"We":[43,176],"propose":[44],"workflow":[46],"carry":[48],"out":[49,102],"this":[50,92,98],"task,":[53],"using":[54,103,128],"text":[56],"mining":[57],"in":[59,169,186,191],"conjunction":[60],"with":[61,119,151],"state":[63],"art":[66],"method,":[68,135],"well":[70],"widely":[73],"accessible":[74],"and":[75,123],"comprehensive":[76],"dataset.":[77],"Among":[78],"several":[79,162],"modern":[80],"classifiers,":[81],"random":[82],"forests":[83],"have":[84,177],"been":[85],"found":[86],"be":[88],"best":[90],"at":[91,207],"task.":[94],"training":[96,121],"classifier":[99],"was":[100],"carried":[101],"experimentally":[105],"validated":[106],"dataset":[107],"Database":[109,171],"Ligand-Receptor":[111],"Partners":[112],"(DLRP)":[113],"pairs.":[115],"New":[116],"examples,":[117],"co-cited":[118],"receptors":[122],"ligands,":[124],"then":[126],"classified":[127],"trained":[130],"classifier.":[131],"After":[132],"applying":[133],"our":[134,183],"we":[136,139,160],"find":[137,161],"that":[138,165],"able":[141],"successfully":[143],"within":[147],"GPCR":[149],"family":[150],"balanced":[153,180],"accuracy":[154,181],"0.96.":[156],"Upon":[157],"further":[158],"inspection,":[159],"supported":[163],"interactions":[164],"were":[166],"not":[167],"present":[168],"Interacting":[173],"Proteins":[174],"(DIPdatabase).":[175],"measured":[178],"method":[184],"resulting":[185],"high":[187],"quality":[188],"predictions":[189],"stored":[190],"available":[193,206],"database":[194],"ReLiance.":[195],"Availability:":[196],"http://homes.esat.kuleuven.be/~bioiuser/ReLianceDB/index.php":[197],"Contact:":[198],"yves.moreau@esat.kuleuven.be;":[199],"ernesto.iacucci@gmail.com":[200],"Supplementary":[201,203],"information:":[202],"data":[204],"Bioinformatics":[208],"online.":[209]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
