{"id":"https://openalex.org/W2168748467","doi":"https://doi.org/10.1093/bioinformatics/bts388","title":"Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics","display_name":"Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics","publication_year":2012,"publication_date":"2012-09-03","ids":{"openalex":"https://openalex.org/W2168748467","doi":"https://doi.org/10.1093/bioinformatics/bts388","mag":"2168748467","pmid":"https://pubmed.ncbi.nlm.nih.gov/22962453"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts388","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts388","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i363/48884171/bioinformatics_28_18_i363.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i363/48884171/bioinformatics_28_18_i363.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076017001","display_name":"Yu\u2010Wei Wu","orcid":"https://orcid.org/0000-0002-5603-1194"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu-Wei Wu","raw_affiliation_strings":["1 School of Informatics and Computing"],"affiliations":[{"raw_affiliation_string":"1 School of Informatics and Computing","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078928762","display_name":"Mina Rho","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mina Rho","raw_affiliation_strings":["1 School of Informatics and Computing"],"affiliations":[{"raw_affiliation_string":"1 School of Informatics and Computing","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039718297","display_name":"Thomas G. Doak","orcid":"https://orcid.org/0000-0001-5487-553X"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas G. Doak","raw_affiliation_strings":["2 Department of Biology, Indiana University, Bloomington, IN 47405, USA"],"affiliations":[{"raw_affiliation_string":"2 Department of Biology, Indiana University, Bloomington, IN 47405, USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082620694","display_name":"Yuzhen Ye","orcid":"https://orcid.org/0000-0003-3707-3185"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Yuzhen Ye","raw_affiliation_strings":["1 School of Informatics and Computing"],"affiliations":[{"raw_affiliation_string":"1 School of Informatics and Computing","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5082620694"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4447,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.81512573,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"18","first_page":"i363","last_page":"i369"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-stitching","display_name":"Image stitching","score":0.8995863199234009},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7567455768585205},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6480783820152283},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.61555016040802},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45764750242233276},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40673333406448364},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.388927161693573},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3584337830543518},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.347938597202301},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24725082516670227},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21839657425880432},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17912238836288452},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.07055917382240295}],"concepts":[{"id":"https://openalex.org/C29081049","wikidata":"https://www.wikidata.org/wiki/Q1364242","display_name":"Image stitching","level":2,"score":0.8995863199234009},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7567455768585205},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6480783820152283},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.61555016040802},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45764750242233276},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40673333406448364},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.388927161693573},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3584337830543518},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.347938597202301},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24725082516670227},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21839657425880432},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17912238836288452},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07055917382240295}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts388","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts388","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i363/48884171/bioinformatics_28_18_i363.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22962453","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22962453","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2440687","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3436815","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts388","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts388","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i363/48884171/bioinformatics_28_18_i363.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168748467.pdf","grobid_xml":"https://content.openalex.org/works/W2168748467.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1963524639","https://openalex.org/W1969346416","https://openalex.org/W1969435169","https://openalex.org/W2031207772","https://openalex.org/W2041391522","https://openalex.org/W2048818637","https://openalex.org/W2069689025","https://openalex.org/W2073909558","https://openalex.org/W2101181144","https://openalex.org/W2102118387","https://openalex.org/W2103441770","https://openalex.org/W2107233609","https://openalex.org/W2113601822","https://openalex.org/W2114133992","https://openalex.org/W2124637227","https://openalex.org/W2125826054","https://openalex.org/W2126419817","https://openalex.org/W2128114769","https://openalex.org/W2133253129","https://openalex.org/W2137427011","https://openalex.org/W2137509018","https://openalex.org/W2145336165","https://openalex.org/W2149238618","https://openalex.org/W2150484441","https://openalex.org/W2159406441","https://openalex.org/W2159833474","https://openalex.org/W2161546116","https://openalex.org/W2167062509","https://openalex.org/W2171571559","https://openalex.org/W2912500497","https://openalex.org/W2914081640","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2474302342","https://openalex.org/W1910109602","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2080583581","https://openalex.org/W3037682416","https://openalex.org/W3195915274","https://openalex.org/W3158976456","https://openalex.org/W4285082713"],"abstract_inverted_index":{"yye@indiana.edu.":[0]},"counts_by_year":[{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
