{"id":"https://openalex.org/W2156575897","doi":"https://doi.org/10.1093/bioinformatics/bts372","title":"An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB","display_name":"An approach to describing and analysing bulk biological annotation quality: a case study using UniProtKB","publication_year":2012,"publication_date":"2012-09-07","ids":{"openalex":"https://openalex.org/W2156575897","doi":"https://doi.org/10.1093/bioinformatics/bts372","mag":"2156575897","pmid":"https://pubmed.ncbi.nlm.nih.gov/22962482"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i562/674124/bts372.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i562/674124/bts372.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109529969","display_name":"M. J. Bell","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. J. Bell","raw_affiliation_strings":["School of Computing Science, Newcastle University, Newcastle-Upon-Tyne, NE1 7RU, UK","School of Computing Science"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Newcastle University, Newcastle-Upon-Tyne, NE1 7RU, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"School of Computing Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003647740","display_name":"Colin S. Gillespie","orcid":"https://orcid.org/0000-0003-1787-0275"},"institutions":[{"id":"https://openalex.org/I4210116091","display_name":"Department of Physics, Mathematics and Informatics","ror":"https://ror.org/023sm4k53","country_code":"BY","type":"facility","lineage":["https://openalex.org/I151823869","https://openalex.org/I4210116091"]}],"countries":["BY"],"is_corresponding":false,"raw_author_name":"C. S. Gillespie","raw_affiliation_strings":["School of Mathematics & Statistics and","School of Mathematics & Statistics"],"affiliations":[{"raw_affiliation_string":"School of Mathematics & Statistics and","institution_ids":["https://openalex.org/I4210116091"]},{"raw_affiliation_string":"School of Mathematics & Statistics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053622408","display_name":"Daniel Swan","orcid":"https://orcid.org/0000-0001-8978-8129"},"institutions":[{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]},{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"D. Swan","raw_affiliation_strings":["Bioinformatics Support Unit, ICAMB,","Medical School, Newcastle University, Newcastle-Upon-Tyne, NE1 7RU, UK","Bioinformatics Support Unit, ICAMB, Medical School, Newcastle University, Newcastle-Upon-Tyne, NE1 7RU, UK"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Support Unit, ICAMB,","institution_ids":["https://openalex.org/I4210137637"]},{"raw_affiliation_string":"Medical School, Newcastle University, Newcastle-Upon-Tyne, NE1 7RU, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Bioinformatics Support Unit, ICAMB, Medical School, Newcastle University, Newcastle-Upon-Tyne, NE1 7RU, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059579347","display_name":"Phillip Lord","orcid":"https://orcid.org/0000-0002-4699-6769"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"P. Lord","raw_affiliation_strings":["School of Computing Science,","School of Computing Science"],"affiliations":[{"raw_affiliation_string":"School of Computing Science,","institution_ids":[]},{"raw_affiliation_string":"School of Computing Science","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059579347"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.671,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.69555331,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"18","first_page":"i562","last_page":"i568"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8988567590713501},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8799062967300415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8316450715065002},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.546066164970398},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.545881986618042},{"id":"https://openalex.org/keywords/bantu-languages","display_name":"Bantu languages","score":0.4500197172164917},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.44360795617103577},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.42551547288894653},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.37955737113952637},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34399741888046265},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2828317880630493}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8988567590713501},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8799062967300415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8316450715065002},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.546066164970398},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.545881986618042},{"id":"https://openalex.org/C99878080","wikidata":"https://www.wikidata.org/wiki/Q33146","display_name":"Bantu languages","level":2,"score":0.4500197172164917},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.44360795617103577},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.42551547288894653},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.37955737113952637},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34399741888046265},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2828317880630493},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i562/674124/bts372.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22962482","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22962482","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1208.2175","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1208.2175","pdf_url":"https://arxiv.org/pdf/1208.2175","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:eprint.ncl.ac.uk:194372","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402485","display_name":"Newcastle University ePrints (Newcastle Univesity)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I84884186","host_organization_name":"Newcastle University","host_organization_lineage":["https://openalex.org/I84884186"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:2440671","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3436799","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/i562/674124/bts372.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.5199999809265137,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156575897.pdf","grobid_xml":"https://content.openalex.org/works/W2156575897.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W132151164","https://openalex.org/W1481128830","https://openalex.org/W1604962959","https://openalex.org/W1967390364","https://openalex.org/W1973626596","https://openalex.org/W1981346422","https://openalex.org/W1986570273","https://openalex.org/W1992649154","https://openalex.org/W2000042664","https://openalex.org/W2003144438","https://openalex.org/W2003342198","https://openalex.org/W2011025549","https://openalex.org/W2015087122","https://openalex.org/W2060797027","https://openalex.org/W2061833373","https://openalex.org/W2079656678","https://openalex.org/W2090618725","https://openalex.org/W2091978351","https://openalex.org/W2106546685","https://openalex.org/W2107251251","https://openalex.org/W2110857277","https://openalex.org/W2118930999","https://openalex.org/W2127563440","https://openalex.org/W2128807557","https://openalex.org/W2130253098","https://openalex.org/W2143738293","https://openalex.org/W2146223937","https://openalex.org/W2148130205","https://openalex.org/W2148853951","https://openalex.org/W2154612479","https://openalex.org/W2166361106","https://openalex.org/W2168536291","https://openalex.org/W2171602500","https://openalex.org/W2528884786","https://openalex.org/W2606669940","https://openalex.org/W2772934464","https://openalex.org/W3103362336","https://openalex.org/W3124548875","https://openalex.org/W4211208250","https://openalex.org/W4213149192","https://openalex.org/W4239620712","https://openalex.org/W4248343126","https://openalex.org/W4255273222"],"related_works":["https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2035528219","https://openalex.org/W2129800387","https://openalex.org/W2402478170","https://openalex.org/W2946410450","https://openalex.org/W2080497949","https://openalex.org/W2901823680","https://openalex.org/W2169425537","https://openalex.org/W2397655851"],"abstract_inverted_index":{"phillip.lord@newcastle.ac.uk.":[0]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
