{"id":"https://openalex.org/W2139545576","doi":"https://doi.org/10.1093/bioinformatics/bts367","title":"AutoBind: automatic extraction of protein\u2013ligand-binding affinity data from biological literature","display_name":"AutoBind: automatic extraction of protein\u2013ligand-binding affinity data from biological literature","publication_year":2012,"publication_date":"2012-07-03","ids":{"openalex":"https://openalex.org/W2139545576","doi":"https://doi.org/10.1093/bioinformatics/bts367","mag":"2139545576","pmid":"https://pubmed.ncbi.nlm.nih.gov/22753780"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts367","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts367","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/16/2162/48870763/bioinformatics_28_16_2162.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/16/2162/48870763/bioinformatics_28_16_2162.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059145234","display_name":"Darby Tien-Hao Chang","orcid":"https://orcid.org/0000-0001-9119-4231"},"institutions":[{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Darby Tien-Hao Chang","raw_affiliation_strings":["1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I91807558","https://openalex.org/I4210096666","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103561843","display_name":"Chao-Hsuan Ke","orcid":null},"institutions":[{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chao-Hsuan Ke","raw_affiliation_strings":["1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I91807558","https://openalex.org/I4210096666","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075779650","display_name":"Jung\u2010Hsin Lin","orcid":"https://orcid.org/0000-0002-6712-4994"},"institutions":[{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jung-Hsin Lin","raw_affiliation_strings":["1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I91807558","https://openalex.org/I4210096666","https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062802526","display_name":"Jung-Hsien Chiang","orcid":"https://orcid.org/0000-0002-4657-6705"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jung-Hsien Chiang","raw_affiliation_strings":["1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Department of Electrical Engineering, 2Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, 3School of Pharmacy, National Taiwan University, Taipei 10051 and 4Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I91807558","https://openalex.org/I4210096666","https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5059145234"],"corresponding_institution_ids":["https://openalex.org/I16733864","https://openalex.org/I4210096666","https://openalex.org/I91807558"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3822,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.82596723,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"28","issue":"16","first_page":"2162","last_page":"2168"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/affinities","display_name":"Affinities","score":0.8018630743026733},{"id":"https://openalex.org/keywords/binding-affinities","display_name":"Binding affinities","score":0.6154242157936096},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5893399715423584},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5197072625160217},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5122884511947632},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4741330146789551},{"id":"https://openalex.org/keywords/protein-ligand","display_name":"Protein ligand","score":0.4209105968475342},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35230952501296997},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3314172029495239},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32948821783065796},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.25781965255737305},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21605530381202698},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.16981512308120728},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10282382369041443},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09869202971458435}],"concepts":[{"id":"https://openalex.org/C2780283098","wikidata":"https://www.wikidata.org/wiki/Q4688960","display_name":"Affinities","level":2,"score":0.8018630743026733},{"id":"https://openalex.org/C3018795828","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Binding affinities","level":3,"score":0.6154242157936096},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5893399715423584},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5197072625160217},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5122884511947632},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4741330146789551},{"id":"https://openalex.org/C109095088","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Protein ligand","level":2,"score":0.4209105968475342},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35230952501296997},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3314172029495239},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32948821783065796},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.25781965255737305},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21605530381202698},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.16981512308120728},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10282382369041443},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09869202971458435},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts367","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts367","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/16/2162/48870763/bioinformatics_28_16_2162.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22753780","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22753780","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts367","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts367","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/16/2162/48870763/bioinformatics_28_16_2162.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5}],"awards":[{"id":"https://openalex.org/G5487231515","display_name":null,"funder_award_id":"NSC100-","funder_id":"https://openalex.org/F4320321040","funder_display_name":"National Science Council"}],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139545576.pdf","grobid_xml":"https://content.openalex.org/works/W2139545576.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W626058384","https://openalex.org/W1496662025","https://openalex.org/W1570399918","https://openalex.org/W1980860611","https://openalex.org/W1981933378","https://openalex.org/W1998643444","https://openalex.org/W2006566482","https://openalex.org/W2009867076","https://openalex.org/W2010941714","https://openalex.org/W2032566933","https://openalex.org/W2038147869","https://openalex.org/W2040223842","https://openalex.org/W2064171774","https://openalex.org/W2092285329","https://openalex.org/W2096864392","https://openalex.org/W2097052916","https://openalex.org/W2097483500","https://openalex.org/W2097960255","https://openalex.org/W2104398328","https://openalex.org/W2111925240","https://openalex.org/W2114090586","https://openalex.org/W2114420708","https://openalex.org/W2116109811","https://openalex.org/W2121727492","https://openalex.org/W2123439964","https://openalex.org/W2124617249","https://openalex.org/W2127553917","https://openalex.org/W2128165179","https://openalex.org/W2130479394","https://openalex.org/W2138275182","https://openalex.org/W2140937954","https://openalex.org/W2143567718","https://openalex.org/W2145447349","https://openalex.org/W2146465875","https://openalex.org/W2152698860","https://openalex.org/W2155063687","https://openalex.org/W2157628440","https://openalex.org/W2161062388","https://openalex.org/W2165671627","https://openalex.org/W2166057395","https://openalex.org/W2330406605","https://openalex.org/W2913846571","https://openalex.org/W2923652028","https://openalex.org/W4285719527","https://openalex.org/W6634116448","https://openalex.org/W6645995274","https://openalex.org/W6658704000","https://openalex.org/W6682425626"],"related_works":["https://openalex.org/W3187200704","https://openalex.org/W2031259671","https://openalex.org/W3112966125","https://openalex.org/W2108080735","https://openalex.org/W1990832091","https://openalex.org/W2095596733","https://openalex.org/W4240532245","https://openalex.org/W1966443150","https://openalex.org/W4248477353","https://openalex.org/W1532706714"],"abstract_inverted_index":{"AutoBind":[0],"is":[1,10],"automatically":[2],"updated":[3],"on":[4],"a":[5],"monthly":[6],"basis,":[7],"and":[8,15,26],"it":[9],"freely":[11],"available":[12],"at":[13],"http://autobind.csie.ncku.edu.tw/":[14],"http://autobind.mc.ntu.edu.tw/.":[16],"All":[17],"of":[18],"the":[19],"deposited":[20],"binding":[21],"affinities":[22],"have":[23],"been":[24],"refined":[25],"approved":[27],"manually":[28],"before":[29],"being":[30],"released.":[31]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
