{"id":"https://openalex.org/W2108177546","doi":"https://doi.org/10.1093/bioinformatics/bts361","title":"Targeted retrieval of gene expression measurements using regulatory models","display_name":"Targeted retrieval of gene expression measurements using regulatory models","publication_year":2012,"publication_date":"2012-06-27","ids":{"openalex":"https://openalex.org/W2108177546","doi":"https://doi.org/10.1093/bioinformatics/bts361","mag":"2108177546","pmid":"https://pubmed.ncbi.nlm.nih.gov/22743225"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2349/48884775/bioinformatics_28_18_2349.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2349/48884775/bioinformatics_28_18_2349.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017701864","display_name":"Elisabeth Georgii","orcid":"https://orcid.org/0000-0002-7511-5510"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Elisabeth Georgii","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026502640","display_name":"Jarkko Saloj\u00e4rvi","orcid":"https://orcid.org/0000-0002-4096-6278"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jarkko Saloj\u00e4rvi","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073609442","display_name":"Mikael Brosch\u00e9","orcid":"https://orcid.org/0000-0002-1135-2496"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Mikael Brosch\u00e9","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032931151","display_name":"Jaakko Kangasj\u00e4rvi","orcid":"https://orcid.org/0000-0002-8959-1809"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jaakko Kangasj\u00e4rvi","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018305257","display_name":"Samuel Kaski","orcid":"https://orcid.org/0000-0003-1925-9154"},"institutions":[{"id":"https://openalex.org/I32943570","display_name":"Helsinki Institute for Information Technology","ror":"https://ror.org/05kph4940","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Samuel Kaski","raw_affiliation_strings":["1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"1 Helsinki Institute for Information Technology HIIT, Department of Information and Computer Science, Aalto University, 00076 Aalto, Espoo, Finland, 2Division of Plant Biology, Department of Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland, 3Veterinary Microbiology and Epidemiology, Department of Veterinary Biosciences, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland and 4Helsinki Institute for Information Technology HIIT, Department of Computer Science, University of Helsinki, 00014 University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I32943570","https://openalex.org/I9927081","https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5017701864"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I32943570","https://openalex.org/I9927081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6136,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.83053922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"28","issue":"18","first_page":"2349","last_page":"2356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.7343567609786987},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.685014545917511},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6784351468086243},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5540807843208313},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5385301113128662},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5257509350776672},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5081801414489746},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.4882238209247589},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42308181524276733},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3998876214027405},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3975907266139984},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3834379315376282},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1659819483757019}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.7343567609786987},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.685014545917511},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6784351468086243},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5540807843208313},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5385301113128662},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5257509350776672},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5081801414489746},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.4882238209247589},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42308181524276733},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3998876214027405},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3975907266139984},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3834379315376282},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1659819483757019},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007938","descriptor_name":"Leukemia","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009997","descriptor_name":"Osmotic Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009997","descriptor_name":"Osmotic Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009997","descriptor_name":"Osmotic Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016014","descriptor_name":"Linear Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2349/48884775/bioinformatics_28_18_2349.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22743225","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22743225","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1015.9666","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1015.9666","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/06/27/bioinformatics.bts361.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/18/2349/48884775/bioinformatics_28_18_2349.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.7300000190734863}],"awards":[{"id":"https://openalex.org/G4249896723","display_name":null,"funder_award_id":"251170","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"}],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320321855","display_name":"Tekes","ror":"https://ror.org/02ag8cq23"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108177546.pdf","grobid_xml":"https://content.openalex.org/works/W2108177546.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W28766783","https://openalex.org/W1510073064","https://openalex.org/W1970357458","https://openalex.org/W1984789788","https://openalex.org/W1990512452","https://openalex.org/W2010824638","https://openalex.org/W2020818362","https://openalex.org/W2030679236","https://openalex.org/W2042221522","https://openalex.org/W2044536026","https://openalex.org/W2059430992","https://openalex.org/W2068858902","https://openalex.org/W2077686961","https://openalex.org/W2082536205","https://openalex.org/W2101696428","https://openalex.org/W2108671185","https://openalex.org/W2111042968","https://openalex.org/W2112464428","https://openalex.org/W2112814716","https://openalex.org/W2116294498","https://openalex.org/W2117262895","https://openalex.org/W2121171791","https://openalex.org/W2122825543","https://openalex.org/W2127053639","https://openalex.org/W2131659389","https://openalex.org/W2135046866","https://openalex.org/W2141899181","https://openalex.org/W2144544802","https://openalex.org/W2146280873","https://openalex.org/W2152482800","https://openalex.org/W2157611936","https://openalex.org/W2166473218","https://openalex.org/W2167009288","https://openalex.org/W2169056504","https://openalex.org/W2751318774","https://openalex.org/W2963032544","https://openalex.org/W3098834468","https://openalex.org/W3098870514","https://openalex.org/W4206070770","https://openalex.org/W4238253035","https://openalex.org/W4285719527","https://openalex.org/W6601201599","https://openalex.org/W6629836468","https://openalex.org/W6684116732"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W4390569940","https://openalex.org/W2888392564","https://openalex.org/W4361193272","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W2806259446","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4310922872"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
