{"id":"https://openalex.org/W4213158455","doi":"https://doi.org/10.1093/bioinformatics/bts353","title":"A strategy for building neuroanatomy ontologies","display_name":"A strategy for building neuroanatomy ontologies","publication_year":2012,"publication_date":"2012-07-14","ids":{"openalex":"https://openalex.org/W4213158455","doi":"https://doi.org/10.1093/bioinformatics/bts353"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts353","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts353","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/2091/655100/bts353.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/2091/655100/bts353.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053103903","display_name":"David Osumi-Sutherland","orcid":"https://orcid.org/0000-0002-7073-9172"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"David Osumi-Sutherland","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK,","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003771617","display_name":"Simon Reeve","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Reeve","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK,","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA,","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080272127","display_name":"Fabian Neuhaus","orcid":"https://orcid.org/0000-0002-1058-3102"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fabian Neuhaus","raw_affiliation_strings":["National Center for Ontological Research, Department of Philosophy, University at Buffalo, Buffalo, NY 14260, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ontological Research, Department of Philosophy, University at Buffalo, Buffalo, NY 14260, USA,","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053171726","display_name":"Alan Ruttenberg","orcid":"https://orcid.org/0000-0002-1604-3078"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Ruttenberg","raw_affiliation_strings":["School of Dental Medicine, University at Buffalo, Buffalo, NY 14214, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Dental Medicine, University at Buffalo, Buffalo, NY 14214, USA,","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055440525","display_name":"Gregory S.X.E. Jefferis","orcid":"https://orcid.org/0000-0002-0587-9355"},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gregory S. X. E. Jefferis","raw_affiliation_strings":["Division of Neurobiology, MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Neurobiology, MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK and","institution_ids":["https://openalex.org/I170203145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026384936","display_name":"J. Douglas Armstrong","orcid":"https://orcid.org/0000-0002-5397-3864"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. Douglas Armstrong","raw_affiliation_strings":["School of Informatics, University of Edinburgh, Edinburgh, EH8 9AB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, Edinburgh, EH8 9AB, UK","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5053103903"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.33466014,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"28","issue":"15","first_page":"2091","last_page":"2091"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neuroanatomy","display_name":"Neuroanatomy","score":0.6898719072341919},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6896126866340637},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4190634787082672},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3504854440689087},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22300124168395996},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.14509925246238708},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10964205861091614}],"concepts":[{"id":"https://openalex.org/C103378370","wikidata":"https://www.wikidata.org/wiki/Q948647","display_name":"Neuroanatomy","level":2,"score":0.6898719072341919},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6896126866340637},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4190634787082672},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3504854440689087},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22300124168395996},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.14509925246238708},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10964205861091614}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/bts353","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts353","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/2091/655100/bts353.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts353","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts353","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/2091/655100/bts353.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1286251239","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G2776628454","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5123489780","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8431251193","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320322909","display_name":"Isaac Newton Trust","ror":"https://ror.org/02gn6ta77"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4213158455.pdf","grobid_xml":"https://content.openalex.org/works/W4213158455.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1482585805","https://openalex.org/W1530698336","https://openalex.org/W1580256897","https://openalex.org/W1973431365","https://openalex.org/W1986017913","https://openalex.org/W2004884668","https://openalex.org/W2044257395","https://openalex.org/W2064025050","https://openalex.org/W2075433744","https://openalex.org/W2095679373","https://openalex.org/W2110643873","https://openalex.org/W2113142309","https://openalex.org/W2117124646","https://openalex.org/W2127695105","https://openalex.org/W2135823825","https://openalex.org/W2152255315","https://openalex.org/W2159214609","https://openalex.org/W2169331639","https://openalex.org/W2396405241","https://openalex.org/W2572885380","https://openalex.org/W4229959303","https://openalex.org/W4237429552","https://openalex.org/W4248381229","https://openalex.org/W4251097445"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4235631914","https://openalex.org/W97694169","https://openalex.org/W3016130157","https://openalex.org/W3212461180","https://openalex.org/W2390279801","https://openalex.org/W3198224272","https://openalex.org/W2358668433","https://openalex.org/W4248648960","https://openalex.org/W4225373853"],"abstract_inverted_index":{"Motivation:":[0],"Advancing":[1],"our":[2,182],"understanding":[3],"of":[4,28,65,77,152,161,171,181],"how":[5],"nervous":[6],"systems":[7],"work":[8],"will":[9,36],"require":[10,38],"the":[11,39,60,136,156,179,188,192],"ability":[12,40],"to":[13,32,41,62,89,104,111,122,140,175],"store":[14],"and":[15,23,51,74,107,110,113,125,135,158,164],"annotate":[16,90],"3D":[17],"anatomical":[18,78],"datasets,":[19],"recording":[20,155],"morphology,":[21],"partonomy":[22],"connectivity":[24,159],"at":[25],"multiple":[26,81],"levels":[27],"granularity":[29],"from":[30,173],"subcellular":[31],"gross":[33],"anatomy.":[34],"It":[35],"also":[37],"integrate":[42],"this":[43],"data":[44],"with":[45],"other":[46],"datatypes":[47],"including":[48],"functional,":[49],"genetic":[50],"electrophysiological":[52],"data.":[53],"The":[54,83],"web":[55,196],"ontology":[56,189],"language":[57],"OWL2":[58],"provides":[59],"means":[61],"solve":[63],"many":[64],"these":[66],"problems.":[67],"Using":[68],"it,":[69],"one":[70],"can":[71,86,101],"rigorously":[72],"define":[73,149],"relate":[75,141],"classes":[76,85,134,163],"structure":[79],"using":[80],"criteria.":[82],"resulting":[84],"be":[87,102],"used":[88,103,139],"datasets":[91],"recording,":[92],"for":[93,119,154],"example,":[94],"gene":[95],"expression":[96],"or":[97],"electrophysiology.":[98],"Reasoning":[99],"software":[100],"automate":[105],"classification":[106],"error":[108],"checking":[109],"construct":[112],"answer":[114],"sophisticated":[115],"combinatorial":[116],"queries.":[117],"But":[118],"such":[120],"queries":[121],"give":[123],"consistent":[124],"biologically":[126],"meaningful":[127],"results,":[128],"it":[129],"is":[130],"important":[131],"that":[132,190],"both":[133],"terms":[137],"(relations)":[138],"them":[142],"are":[143],"carefully":[144],"defined.":[145],"Results:":[146],"We":[147,177],"formally":[148],"a":[150,168],"set":[151],"relations":[153],"spatial":[157],"relationships":[160],"neuron":[162],"brain":[165],"regions":[166],"in":[167,187],"broad":[169],"range":[170],"species,":[172],"vertebrates":[174],"arthropods.":[176],"illustrate":[178],"utility":[180],"approach":[183],"via":[184],"its":[185],"application":[186],"drives":[191],"Virtual":[193],"Fly":[194],"Brain":[195],"resource.":[197]},"counts_by_year":[],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
