{"id":"https://openalex.org/W2096967557","doi":"https://doi.org/10.1093/bioinformatics/bts352","title":"ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality","display_name":"ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality","publication_year":2012,"publication_date":"2012-06-19","ids":{"openalex":"https://openalex.org/W2096967557","doi":"https://doi.org/10.1093/bioinformatics/bts352","mag":"2096967557","pmid":"https://pubmed.ncbi.nlm.nih.gov/22718784"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts352","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts352","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1111.3033","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011254713","display_name":"M\u00e1t\u00e9 Szalay-Bek\u0151","orcid":null},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210107617","display_name":"Institute for Solid State Physics and Optics","ror":"https://ror.org/01pdam362","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210107617","https://openalex.org/I4210126225","https://openalex.org/I4387152226"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"M\u00e1t\u00e9 Szalay-Bek\u0151","raw_affiliation_strings":["1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary","institution_ids":["https://openalex.org/I101202996","https://openalex.org/I106118109","https://openalex.org/I2800351701","https://openalex.org/I4210107617","https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009165215","display_name":"Robin Palotai","orcid":null},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210107617","display_name":"Institute for Solid State Physics and Optics","ror":"https://ror.org/01pdam362","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210107617","https://openalex.org/I4210126225","https://openalex.org/I4387152226"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Robin Palotai","raw_affiliation_strings":["1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary","institution_ids":["https://openalex.org/I101202996","https://openalex.org/I106118109","https://openalex.org/I2800351701","https://openalex.org/I4210107617","https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042390756","display_name":"Bal\u00e1zs Szappanos","orcid":"https://orcid.org/0000-0002-5075-1799"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210107617","display_name":"Institute for Solid State Physics and Optics","ror":"https://ror.org/01pdam362","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210107617","https://openalex.org/I4210126225","https://openalex.org/I4387152226"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Bal\u00e1zs Szappanos","raw_affiliation_strings":["1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary","institution_ids":["https://openalex.org/I101202996","https://openalex.org/I106118109","https://openalex.org/I2800351701","https://openalex.org/I4210107617","https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000202774","display_name":"I. Kov\u00e1cs","orcid":"https://orcid.org/0000-0002-6890-6277"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210107617","display_name":"Institute for Solid State Physics and Optics","ror":"https://ror.org/01pdam362","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210107617","https://openalex.org/I4210126225","https://openalex.org/I4387152226"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Istv\u00e1n A. Kov\u00e1cs","raw_affiliation_strings":["1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary","institution_ids":["https://openalex.org/I101202996","https://openalex.org/I106118109","https://openalex.org/I2800351701","https://openalex.org/I4210107617","https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031981177","display_name":"Bal\u00e1zs Papp","orcid":"https://orcid.org/0000-0003-3093-8852"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210107617","display_name":"Institute for Solid State Physics and Optics","ror":"https://ror.org/01pdam362","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210107617","https://openalex.org/I4210126225","https://openalex.org/I4387152226"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Bal\u00e1zs Papp","raw_affiliation_strings":["1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary","institution_ids":["https://openalex.org/I101202996","https://openalex.org/I106118109","https://openalex.org/I2800351701","https://openalex.org/I4210107617","https://openalex.org/I7597260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081215274","display_name":"P\u00e9ter Csermely","orcid":"https://orcid.org/0000-0001-9234-0659"},"institutions":[{"id":"https://openalex.org/I101202996","display_name":"Semmelweis University","ror":"https://ror.org/01g9ty582","country_code":"HU","type":"education","lineage":["https://openalex.org/I101202996"]},{"id":"https://openalex.org/I106118109","display_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","ror":"https://ror.org/01jsq2704","country_code":"HU","type":"education","lineage":["https://openalex.org/I106118109"]},{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210107617","display_name":"Institute for Solid State Physics and Optics","ror":"https://ror.org/01pdam362","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210107617","https://openalex.org/I4210126225","https://openalex.org/I4387152226"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"government","lineage":["https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":true,"raw_author_name":"P\u00e9ter Csermely","raw_affiliation_strings":["1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical Chemistry, Semmelweis University, Budapest 1444, 2Institute of Biochemistry, Biological Research Centre, Hungarian Academy of Sciences, Szeged 6726, 3Department of Physics, Lor\u00e1nd E\u00f6tv\u00f6s University and 4Institute for Solid State Physics and Optics, Wigner Research Centre, Hungarian Academy of Sciences, Budapest 1525, Hungary","institution_ids":["https://openalex.org/I101202996","https://openalex.org/I106118109","https://openalex.org/I2800351701","https://openalex.org/I4210107617","https://openalex.org/I7597260"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081215274"],"corresponding_institution_ids":["https://openalex.org/I101202996","https://openalex.org/I106118109","https://openalex.org/I2800351701","https://openalex.org/I4210107617","https://openalex.org/I7597260"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.294,"has_fulltext":false,"cited_by_count":115,"citation_normalized_percentile":{"value":0.95444602,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"28","issue":"16","first_page":"2202","last_page":"2204"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5067999958992004,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5067999958992004,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.09449999779462814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.08640000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7850885391235352},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7056857943534851},{"id":"https://openalex.org/keywords/mac-os","display_name":"Mac OS","score":0.625184953212738},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5967016816139221},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5094640851020813},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.4863058030605316},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.48472166061401367},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.476701945066452},{"id":"https://openalex.org/keywords/layer","display_name":"Layer (electronics)","score":0.4637622833251953},{"id":"https://openalex.org/keywords/plug-and-play","display_name":"Plug and play","score":0.4500378966331482},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4408895671367645},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42633044719696045},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39322733879089355},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.2558557093143463}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7850885391235352},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7056857943534851},{"id":"https://openalex.org/C522133331","wikidata":"https://www.wikidata.org/wiki/Q43627","display_name":"Mac OS","level":3,"score":0.625184953212738},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5967016816139221},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5094640851020813},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.4863058030605316},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.48472166061401367},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.476701945066452},{"id":"https://openalex.org/C2779227376","wikidata":"https://www.wikidata.org/wiki/Q6505497","display_name":"Layer (electronics)","level":2,"score":0.4637622833251953},{"id":"https://openalex.org/C2780070844","wikidata":"https://www.wikidata.org/wiki/Q857815","display_name":"Plug and play","level":2,"score":0.4500378966331482},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4408895671367645},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42633044719696045},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39322733879089355},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.2558557093143463},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts352","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts352","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22718784","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22718784","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:1111.3033","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1111.3033","pdf_url":"https://arxiv.org/pdf/1111.3033","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1018.3868","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1018.3868","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/28/16/2202.full.pdf","raw_type":"text"},{"id":"pmh:oai:edit.elte.hu:10831/48278","is_oa":true,"landing_page_url":"http://hdl.handle.net/10831/48278","pdf_url":null,"source":{"id":"https://openalex.org/S4306400126","display_name":"ELTE Digital Institutional Repository (EDIT) (E\u00f6tv\u00f6s Lor\u00e1nd University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I106118109","host_organization_name":"E\u00f6tv\u00f6s Lor\u00e1nd University","host_organization_lineage":["https://openalex.org/I106118109"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1111.3033","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1111.3033","pdf_url":"https://arxiv.org/pdf/1111.3033","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332524","display_name":"Gillings School of Public Health","ror":"https://ror.org/0130frc33"},{"id":"https://openalex.org/F4320337759","display_name":"Carolina Population Center, University of North Carolina at Chapel Hill","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1554663460","https://openalex.org/W1981029985","https://openalex.org/W1987299841","https://openalex.org/W1995945562","https://openalex.org/W2002574233","https://openalex.org/W2010371279","https://openalex.org/W2011168681","https://openalex.org/W2015953751","https://openalex.org/W2016088798","https://openalex.org/W2017987256","https://openalex.org/W2020800417","https://openalex.org/W2025142996","https://openalex.org/W2025543856","https://openalex.org/W2033590892","https://openalex.org/W2044988896","https://openalex.org/W2047940964","https://openalex.org/W2048376619","https://openalex.org/W2058720919","https://openalex.org/W2061239067","https://openalex.org/W2070040136","https://openalex.org/W2075422720","https://openalex.org/W2081050097","https://openalex.org/W2085658677","https://openalex.org/W2090264443","https://openalex.org/W2095293504","https://openalex.org/W2102707884","https://openalex.org/W2110620844","https://openalex.org/W2112090702","https://openalex.org/W2116022040","https://openalex.org/W2124166542","https://openalex.org/W2125673723","https://openalex.org/W2127048411","https://openalex.org/W2132202037","https://openalex.org/W2136850043","https://openalex.org/W2137898013","https://openalex.org/W2139553051","https://openalex.org/W2144656637","https://openalex.org/W2145523428","https://openalex.org/W2147805410","https://openalex.org/W2148606196","https://openalex.org/W2149780759","https://openalex.org/W2159675211","https://openalex.org/W2164450739","https://openalex.org/W2164928285","https://openalex.org/W2165232124","https://openalex.org/W2165533101","https://openalex.org/W2165891030","https://openalex.org/W2167114132","https://openalex.org/W2167308484","https://openalex.org/W2167785155","https://openalex.org/W2168330282","https://openalex.org/W2170427655","https://openalex.org/W2797563284","https://openalex.org/W3100689248","https://openalex.org/W3102641634","https://openalex.org/W3103789001"],"related_works":["https://openalex.org/W2170060741","https://openalex.org/W2289312978","https://openalex.org/W2279095528","https://openalex.org/W2133417485","https://openalex.org/W2352394813","https://openalex.org/W2360042170","https://openalex.org/W2368465758","https://openalex.org/W2356073227","https://openalex.org/W2108894446","https://openalex.org/W4223592178"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,36,58,70,92],"ModuLand":[2,71],"plug-in":[3,59,93],"provides":[4],"Cytoscape":[5],"users":[6],"an":[7],"algorithm":[8],"for":[9],"determining":[10],"extensively":[11],"overlapping":[12],"network":[13],"modules.":[14,57],"Moreover,":[15],"it":[16],"identifies":[17],"several":[18],"hierarchical":[19,28],"layers":[20],"of":[21,25,32,45],"modules,":[22],"where":[23],"meta-nodes":[24],"the":[26,33,43,46],"higher":[27],"layer":[29],"represent":[30],"modules":[31],"lower":[34],"layer.":[35],"tool":[37,72],"assigns":[38],"module":[39],"cores,":[40],"which":[41],"predict":[42],"function":[44],"whole":[47],"module,":[48],"and":[49,88,94],"determines":[50],"key":[51],"nodes":[52],"bridging":[53],"two":[54],"or":[55,78],"multiple":[56],"has":[60],"a":[61],"detailed":[62],"JAVA-based":[63],"graphical":[64],"interface":[65],"with":[66],"various":[67],"colouring":[68],"options.":[69],"can":[73,98],"run":[74],"on":[75,85],"Windows,":[76],"Linux":[77],"Mac":[79],"OS.":[80],"We":[81],"demonstrate":[82],"its":[83,95],"use":[84],"protein":[86],"structure":[87],"metabolic":[89],"networks.":[90],"AVAILABILITY:":[91],"user":[96],"guide":[97],"be":[99],"downloaded":[100],"freely":[101],"from:":[102],"http://www.linkgroup.hu/modules.php.":[103]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
