{"id":"https://openalex.org/W2115109270","doi":"https://doi.org/10.1093/bioinformatics/bts347","title":"Response to \u2018Comments on \u201cMMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets\u201d\u2019","display_name":"Response to \u2018Comments on \u201cMMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets\u201d\u2019","publication_year":2012,"publication_date":"2012-06-25","ids":{"openalex":"https://openalex.org/W2115109270","doi":"https://doi.org/10.1093/bioinformatics/bts347","mag":"2115109270"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts347","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts347","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088778564","display_name":"Tuobin Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tuobin Wang","raw_affiliation_strings":["1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075295071","display_name":"Arminja N. Kettenbach","orcid":"https://orcid.org/0000-0003-3979-4576"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arminja N. Kettenbach","raw_affiliation_strings":["1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035751524","display_name":"Scott A. Gerber","orcid":"https://orcid.org/0000-0002-2964-5051"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott A. Gerber","raw_affiliation_strings":["1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030579910","display_name":"Chris Bailey\u2010Kellogg","orcid":"https://orcid.org/0000-0003-1860-0912"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Bailey-Kellogg","raw_affiliation_strings":["1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Dartmouth College, Hanover, NH 03755, 2Department of Genetics, Dartmouth Medical School and 3Department of Biochemistry, Dartmouth Medical School, Lebanon, NH 03756, USA","institution_ids":["https://openalex.org/I107672454"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5088778564"],"corresponding_institution_ids":["https://openalex.org/I107672454"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1313,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.52404104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"28","issue":"16","first_page":"2213","last_page":"2213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphoproteomics","display_name":"Phosphoproteomics","score":0.8332874774932861},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.7426421642303467},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6189414858818054},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5471115112304688},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3178250193595886},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2637571692466736},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.053551703691482544}],"concepts":[{"id":"https://openalex.org/C6675166","wikidata":"https://www.wikidata.org/wiki/Q7187538","display_name":"Phosphoproteomics","level":5,"score":0.8332874774932861},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.7426421642303467},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6189414858818054},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5471115112304688},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3178250193595886},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2637571692466736},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.053551703691482544},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/bts347","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts347","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2000042427","https://openalex.org/W2140392387","https://openalex.org/W2151423383","https://openalex.org/W2167827705"],"related_works":["https://openalex.org/W1969861852","https://openalex.org/W2319828491","https://openalex.org/W2346694641","https://openalex.org/W2131940178","https://openalex.org/W4280625221","https://openalex.org/W3198829668","https://openalex.org/W2127100016","https://openalex.org/W2069288942","https://openalex.org/W1982375470","https://openalex.org/W2043816461"],"abstract_inverted_index":{"Abstract":[0],"Contact:":[1],"cbk@cs.dartmouth.edu":[2]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}