{"id":"https://openalex.org/W2025937247","doi":"https://doi.org/10.1093/bioinformatics/bts306","title":"Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics data","display_name":"Application of survival analysis methodology to the quantitative analysis of LC-MS proteomics data","publication_year":2012,"publication_date":"2012-05-24","ids":{"openalex":"https://openalex.org/W2025937247","doi":"https://doi.org/10.1093/bioinformatics/bts306","mag":"2025937247","pmid":"https://pubmed.ncbi.nlm.nih.gov/22628520"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts306","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts306","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/1998/48874986/bioinformatics_28_15_1998.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/1998/48874986/bioinformatics_28_15_1998.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013952864","display_name":"Carmen D. Tekwe","orcid":"https://orcid.org/0000-0002-1857-2416"},"institutions":[{"id":"https://openalex.org/I2801502816","display_name":"Texas College","ror":"https://ror.org/04fsb1973","country_code":"US","type":"education","lineage":["https://openalex.org/I2801502816"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Carmen D. Tekwe","raw_affiliation_strings":["Department of Statistics, 3143 TAMU, College Station, TX 77843-3143, USA","Department of Statistics, Texas A & M University, College Station, 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, 3143 TAMU, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I2801502816"]},{"raw_affiliation_string":"Department of Statistics, Texas A & M University, College Station, 77843-3143, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000822072","display_name":"Raymond J. Carroll","orcid":"https://orcid.org/0000-0002-5465-9682"},"institutions":[{"id":"https://openalex.org/I2801502816","display_name":"Texas College","ror":"https://ror.org/04fsb1973","country_code":"US","type":"education","lineage":["https://openalex.org/I2801502816"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raymond J. Carroll","raw_affiliation_strings":["Department of Statistics, 3143 TAMU, College Station, TX 77843-3143, USA","Department of Statistics, Texas A & M University, College Station, 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, 3143 TAMU, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I2801502816"]},{"raw_affiliation_string":"Department of Statistics, Texas A & M University, College Station, 77843-3143, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019742058","display_name":"Alan R. Dabney","orcid":"https://orcid.org/0000-0002-1240-4171"},"institutions":[{"id":"https://openalex.org/I2801502816","display_name":"Texas College","ror":"https://ror.org/04fsb1973","country_code":"US","type":"education","lineage":["https://openalex.org/I2801502816"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan R. Dabney","raw_affiliation_strings":["Department of Statistics, 3143 TAMU, College Station, TX 77843-3143, USA","Department of Statistics, Texas A & M University, College Station, 77843-3143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, 3143 TAMU, College Station, TX 77843-3143, USA","institution_ids":["https://openalex.org/I2801502816"]},{"raw_affiliation_string":"Department of Statistics, Texas A & M University, College Station, 77843-3143, USA","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5013952864"],"corresponding_institution_ids":["https://openalex.org/I2801502816","https://openalex.org/I91045830"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0184,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.71761917,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"28","issue":"15","first_page":"1998","last_page":"2003"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.0027000000700354576,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/weibull-distribution","display_name":"Weibull distribution","score":0.7551518678665161},{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.6582688093185425},{"id":"https://openalex.org/keywords/wilcoxon-signed-rank-test","display_name":"Wilcoxon signed-rank test","score":0.6103057861328125},{"id":"https://openalex.org/keywords/censoring","display_name":"Censoring (clinical trials)","score":0.5766544342041016},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.5739095211029053},{"id":"https://openalex.org/keywords/statistical-power","display_name":"Statistical power","score":0.5351961851119995},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.49175718426704407},{"id":"https://openalex.org/keywords/nonparametric-statistics","display_name":"Nonparametric statistics","score":0.48725858330726624},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.4859091341495514},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.4637864828109741},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4497324824333191},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.4423918128013611},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3626094162464142},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28644850850105286},{"id":"https://openalex.org/keywords/mann\u2013whitney-u-test","display_name":"Mann\u2013Whitney U test","score":0.1467171013355255}],"concepts":[{"id":"https://openalex.org/C173291955","wikidata":"https://www.wikidata.org/wiki/Q732332","display_name":"Weibull distribution","level":2,"score":0.7551518678665161},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.6582688093185425},{"id":"https://openalex.org/C206041023","wikidata":"https://www.wikidata.org/wiki/Q1751970","display_name":"Wilcoxon signed-rank test","level":3,"score":0.6103057861328125},{"id":"https://openalex.org/C137668524","wikidata":"https://www.wikidata.org/wiki/Q189813","display_name":"Censoring (clinical trials)","level":2,"score":0.5766544342041016},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.5739095211029053},{"id":"https://openalex.org/C96608239","wikidata":"https://www.wikidata.org/wiki/Q1199823","display_name":"Statistical power","level":2,"score":0.5351961851119995},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.49175718426704407},{"id":"https://openalex.org/C102366305","wikidata":"https://www.wikidata.org/wiki/Q1097688","display_name":"Nonparametric statistics","level":2,"score":0.48725858330726624},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4859091341495514},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.4637864828109741},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4497324824333191},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.4423918128013611},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3626094162464142},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28644850850105286},{"id":"https://openalex.org/C12868164","wikidata":"https://www.wikidata.org/wiki/Q1424533","display_name":"Mann\u2013Whitney U test","level":2,"score":0.1467171013355255},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018709","descriptor_name":"Statistics, Nonparametric","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018709","descriptor_name":"Statistics, Nonparametric","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018709","descriptor_name":"Statistics, Nonparametric","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/bts306","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts306","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/1998/48874986/bioinformatics_28_15_1998.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22628520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22628520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2719622","is_oa":false,"landing_page_url":"http://europepmc.org/abstract/MED/22628520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.900.6351","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.900.6351","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/05/24/bioinformatics.bts306.full.pdf","raw_type":"text"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/114928","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/114928","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3400956","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3400956","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/597597","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/597597","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts306","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts306","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/15/1998/48874986/bioinformatics_28_15_1998.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G2700991700","display_name":null,"funder_award_id":"(R37-CA057030)","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3097535683","display_name":null,"funder_award_id":"R25 CA090301","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3365016466","display_name":null,"funder_award_id":"R25T-090301","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"},{"id":"https://openalex.org/G4195541392","display_name":null,"funder_award_id":"R27-CA057030","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320332505","display_name":"U.S. Public Health Service","ror":"https://ror.org/05xf94514"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W173882297","https://openalex.org/W1481283024","https://openalex.org/W1597883912","https://openalex.org/W1968380136","https://openalex.org/W1969111313","https://openalex.org/W1993699540","https://openalex.org/W2014032285","https://openalex.org/W2017199538","https://openalex.org/W2019196704","https://openalex.org/W2023096047","https://openalex.org/W2044758663","https://openalex.org/W2050783490","https://openalex.org/W2078271916","https://openalex.org/W2085252131","https://openalex.org/W2089960919","https://openalex.org/W2096863518","https://openalex.org/W2101938218","https://openalex.org/W2104394966","https://openalex.org/W2105381419","https://openalex.org/W2110065044","https://openalex.org/W2119253710","https://openalex.org/W2125419939","https://openalex.org/W2133210805","https://openalex.org/W2136714708","https://openalex.org/W2139096966","https://openalex.org/W2141019834","https://openalex.org/W2147830145","https://openalex.org/W2167942713","https://openalex.org/W2171118759","https://openalex.org/W2480680997","https://openalex.org/W4214512856","https://openalex.org/W4298018660","https://openalex.org/W4299537215","https://openalex.org/W6607192988","https://openalex.org/W6653897158","https://openalex.org/W6676591658","https://openalex.org/W6680648171"],"related_works":["https://openalex.org/W4251832953","https://openalex.org/W4281954079","https://openalex.org/W2060996605","https://openalex.org/W3180080","https://openalex.org/W2003504151","https://openalex.org/W2621969506","https://openalex.org/W2015235728","https://openalex.org/W1968663748","https://openalex.org/W2036600297","https://openalex.org/W1529656578"],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein":[1],"abundance":[2],"in":[3,28,183,191],"quantitative":[4],"proteomics":[5,32],"is":[6,156],"often":[7,66],"based":[8],"on":[9,46],"observed":[10,53],"spectral":[11,48],"features":[12],"derived":[13],"from":[14],"liquid":[15],"chromatography":[16],"mass":[17],"spectrometry":[18],"(LC-MS)":[19],"or":[20,158],"LC-MS/MS":[21],"experiments.":[22],"Peak":[23],"intensities":[24,41,55],"are":[25,61,127,208],"largely":[26],"non-normal":[27],"distribution.":[29],"Furthermore,":[30],"LC-MS-based":[31],"data":[33,155],"frequently":[34],"have":[35,139],"large":[36],"proportions":[37],"of":[38,79,124,151],"missing":[39,152],"peak":[40,54],"due":[42],"to":[43,73,114],"censoring":[44],"mechanisms":[45],"low-abundance":[47],"features.":[49],"Recognizing":[50],"that":[51],"the":[52,58,90,98,149,162,177,184],"detected":[56],"with":[57,106,176,180],"LC-MS":[59],"method":[60,126],"all":[62,195],"positive,":[63],"skewed":[64],"and":[65,92,97,102,109,132],"left-censored,":[67],"we":[68,165],"propose":[69],"using":[70,129,198],"survival":[71,100],"methodology":[72],"carry":[74],"out":[75],"differential":[76,145],"expression":[77,146],"analysis":[78],"proteins.":[80,119],"Various":[81],"standard":[82,144,173],"statistical":[83,121,141,170],"techniques":[84],"including":[85],"non-parametric":[86],"tests":[87],"such":[88,202],"as":[89,203,210],"Kolmogorov-Smirnov":[91],"Wilcoxon-Mann-Whitney":[93],"rank":[94],"sum":[95],"tests,":[96],"parametric":[99],"model":[101],"accelerated":[103],"failure":[104],"time-model":[105],"log-normal,":[107],"log-logistic":[108],"Weibull":[110],"distributions":[111],"were":[112],"used":[113],"detect":[115],"any":[116],"differentially":[117],"expressed":[118],"The":[120,187,205],"operating":[122],"characteristics":[123],"each":[125],"explored":[128],"both":[130],"real":[131],"simulated":[133],"datasets.":[134],"RESULTS:":[135],"Survival":[136],"methods":[137,147],"generally":[138],"greater":[140,169],"power":[142,171],"than":[143,172],"when":[148],"proportion":[150],"protein":[153],"level":[154],"5%":[157],"more.":[159],"In":[160],"particular,":[161],"AFT":[163],"models":[164],"consider":[166],"consistently":[167],"achieve":[168],"testing":[174,188],"procedures,":[175],"discrepancy":[178],"widening":[179],"increasing":[181],"missingness":[182],"proportions.":[185],"AVAILABILITY:":[186],"procedures":[189],"discussed":[190],"this":[192],"article":[193],"can":[194],"be":[196],"performed":[197],"readily":[199],"available":[200],"software":[201],"R.":[204],"R":[206],"codes":[207],"provided":[209],"supplemental":[211],"materials.":[212],"CONTACT:":[213],"ctekwe@stat.tamu.edu.":[214]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
