{"id":"https://openalex.org/W2162902367","doi":"https://doi.org/10.1093/bioinformatics/bts292","title":"Improvement of 3D protein models using multiple templates guided by single-template model quality assessment","display_name":"Improvement of 3D protein models using multiple templates guided by single-template model quality assessment","publication_year":2012,"publication_date":"2012-05-15","ids":{"openalex":"https://openalex.org/W2162902367","doi":"https://doi.org/10.1093/bioinformatics/bts292","mag":"2162902367","pmid":"https://pubmed.ncbi.nlm.nih.gov/22592378"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts292","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts292","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1851/16906023/bts292.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1851/16906023/bts292.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110263922","display_name":"Maria T. Buenavista","orcid":null},"institutions":[{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]},{"id":"https://openalex.org/I2802711169","display_name":"Diamond Light Source","ror":"https://ror.org/05etxs293","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802711169"]},{"id":"https://openalex.org/I4210092957","display_name":"Research Complex at Harwell","ror":"https://ror.org/00gqx0331","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210092957"]},{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria T. Buenavista","raw_affiliation_strings":["1 School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2Biocomputing Section, MRC Harwell, Harwell Oxford Campus, Didcot OX11 0RD and 3Diamond Light Source, Beamline B23, Chilton, Didcot OX11 0DE, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2Biocomputing Section, MRC Harwell, Harwell Oxford Campus, Didcot OX11 0RD and 3Diamond Light Source, Beamline B23, Chilton, Didcot OX11 0DE, UK","institution_ids":["https://openalex.org/I4210092957","https://openalex.org/I2802711169","https://openalex.org/I71052956","https://openalex.org/I4210086857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062814888","display_name":"Daniel B. Roche","orcid":"https://orcid.org/0000-0002-9204-1840"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I2802711169","display_name":"Diamond Light Source","ror":"https://ror.org/05etxs293","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802711169"]},{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]},{"id":"https://openalex.org/I4210092957","display_name":"Research Complex at Harwell","ror":"https://ror.org/00gqx0331","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210092957"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Daniel B. Roche","raw_affiliation_strings":["1 School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2Biocomputing Section, MRC Harwell, Harwell Oxford Campus, Didcot OX11 0RD and 3Diamond Light Source, Beamline B23, Chilton, Didcot OX11 0DE, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2Biocomputing Section, MRC Harwell, Harwell Oxford Campus, Didcot OX11 0RD and 3Diamond Light Source, Beamline B23, Chilton, Didcot OX11 0DE, UK","institution_ids":["https://openalex.org/I4210092957","https://openalex.org/I2802711169","https://openalex.org/I71052956","https://openalex.org/I4210086857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067569944","display_name":"Liam J. McGuffin","orcid":"https://orcid.org/0000-0003-4501-4767"},"institutions":[{"id":"https://openalex.org/I4210086857","display_name":"Mary Lyon Centre at MRC Harwell","ror":"https://ror.org/0001h1y25","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210086857","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I2802711169","display_name":"Diamond Light Source","ror":"https://ror.org/05etxs293","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802711169"]},{"id":"https://openalex.org/I71052956","display_name":"University of Reading","ror":"https://ror.org/05v62cm79","country_code":"GB","type":"education","lineage":["https://openalex.org/I71052956"]},{"id":"https://openalex.org/I4210092957","display_name":"Research Complex at Harwell","ror":"https://ror.org/00gqx0331","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210092957"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Liam J. McGuffin","raw_affiliation_strings":["1 School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2Biocomputing Section, MRC Harwell, Harwell Oxford Campus, Didcot OX11 0RD and 3Diamond Light Source, Beamline B23, Chilton, Didcot OX11 0DE, UK"],"affiliations":[{"raw_affiliation_string":"1 School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AS, 2Biocomputing Section, MRC Harwell, Harwell Oxford Campus, Didcot OX11 0RD and 3Diamond Light Source, Beamline B23, Chilton, Didcot OX11 0DE, UK","institution_ids":["https://openalex.org/I4210092957","https://openalex.org/I2802711169","https://openalex.org/I71052956","https://openalex.org/I4210086857"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067569944"],"corresponding_institution_ids":["https://openalex.org/I2802711169","https://openalex.org/I4210086857","https://openalex.org/I4210092957","https://openalex.org/I71052956"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.2043,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.95696639,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"14","first_page":"1851","last_page":"1857"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.878301739692688},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7341956496238708},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5623400807380676},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34856632351875305},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1325141191482544}],"concepts":[{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.878301739692688},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7341956496238708},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5623400807380676},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34856632351875305},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1325141191482544},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts292","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts292","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1851/16906023/bts292.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22592378","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22592378","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:centaur.reading.ac.uk:28153","is_oa":false,"landing_page_url":"https://centaur.reading.ac.uk/28153/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402273","display_name":"CentAUR (University of Reading)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71052956","host_organization_name":"University of Reading","host_organization_lineage":["https://openalex.org/I71052956"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts292","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts292","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1851/16906023/bts292.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"display_name":"No poverty","id":"https://metadata.un.org/sdg/1"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162902367.pdf","grobid_xml":"https://content.openalex.org/works/W2162902367.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W65274282","https://openalex.org/W121711168","https://openalex.org/W563419954","https://openalex.org/W1588849497","https://openalex.org/W1595347157","https://openalex.org/W1965517743","https://openalex.org/W2009502487","https://openalex.org/W2014301348","https://openalex.org/W2028368848","https://openalex.org/W2037312364","https://openalex.org/W2062123114","https://openalex.org/W2067098868","https://openalex.org/W2073895233","https://openalex.org/W2074481845","https://openalex.org/W2082667898","https://openalex.org/W2094051420","https://openalex.org/W2100856169","https://openalex.org/W2102533986","https://openalex.org/W2103986334","https://openalex.org/W2110252279","https://openalex.org/W2112284439","https://openalex.org/W2115540209","https://openalex.org/W2119550029","https://openalex.org/W2120796076","https://openalex.org/W2125508389","https://openalex.org/W2125725340","https://openalex.org/W2126362472","https://openalex.org/W2126677834","https://openalex.org/W2127261350","https://openalex.org/W2135681967","https://openalex.org/W2138755951","https://openalex.org/W2141783940","https://openalex.org/W2145268834","https://openalex.org/W2150831049","https://openalex.org/W2152811165","https://openalex.org/W2155201844","https://openalex.org/W2155233650","https://openalex.org/W2157938277","https://openalex.org/W2161151688","https://openalex.org/W2613328886","https://openalex.org/W6635688594","https://openalex.org/W6638338139","https://openalex.org/W6680008622","https://openalex.org/W6682187544"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2121300814","https://openalex.org/W4234406076","https://openalex.org/W1886613375","https://openalex.org/W4236081792","https://openalex.org/W4250583430","https://openalex.org/W2010731026","https://openalex.org/W2360893094","https://openalex.org/W4390787808","https://openalex.org/W4236036386"],"abstract_inverted_index":{"Source":[0],"code":[1],"and":[2],"binaries":[3],"can":[4],"be":[5],"freely":[6],"downloaded":[7],"from":[8],"http://www.reading.ac.uk/bioinf/downloads/":[9]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
