{"id":"https://openalex.org/W2108126551","doi":"https://doi.org/10.1093/bioinformatics/bts289","title":"IRView: a database and viewer for protein interacting regions","display_name":"IRView: a database and viewer for protein interacting regions","publication_year":2012,"publication_date":"2012-05-15","ids":{"openalex":"https://openalex.org/W2108126551","doi":"https://doi.org/10.1093/bioinformatics/bts289","mag":"2108126551"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts289","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1949/48870268/bioinformatics_28_14_1949.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1949/48870268/bioinformatics_28_14_1949.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015515586","display_name":"Shigeo Fujimori","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Shigeo Fujimori","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007995013","display_name":"Naoya Hirai","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Naoya Hirai","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043758567","display_name":"Kazuyo Masuoka","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuyo Masuoka","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083033056","display_name":"Tomohiro Oshikubo","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomohiro Oshikubo","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066859433","display_name":"Tatsuhiro Yamashita","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuhiro Yamashita","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111455983","display_name":"Takanori Washio","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takanori Washio","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079013346","display_name":"Ayumu Saito","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ayumu Saito","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025220924","display_name":"Masao Nagasaki","orcid":"https://orcid.org/0000-0002-4292-8785"},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masao Nagasaki","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088167618","display_name":"Satoru Miyano","orcid":"https://orcid.org/0000-0002-1753-6616"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Satoru Miyano","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012497365","display_name":"Etsuko Miyamoto\u2010Sato","orcid":"https://orcid.org/0000-0002-6289-632X"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]},{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Etsuko Miyamoto-Sato","raw_affiliation_strings":["1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan"],"affiliations":[{"raw_affiliation_string":"1 Division of Interactome Medical Sciences, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan, 2Production Solution Business Unit, Production Solution Division.II, Solution Department I, Fujitsu Advanced Engineering Ltd., Tokyo 163-1017, Japan, 3BioIT Business Development Unit, Fujitsu Ltd., Chiba 261-8588, Japan, 4Bioinformatics Department, RIKEN GENESIS Co., Ltd. Yokohama 230-0045, Japan and 5Human Genome Center, Institute of Medical Science, The University of Tokyo, Tokyo 108-8039, Japan","institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5015515586"],"corresponding_institution_ids":["https://openalex.org/I2252096349","https://openalex.org/I74801974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1345,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.53396152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"28","issue":"14","first_page":"1949","last_page":"1950"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6469979286193848},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5693873763084412},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5449815988540649},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5356603860855103},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5208725929260254},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42612242698669434},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3958437442779541},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28402259945869446},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2557497024536133},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2503906488418579},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.09196484088897705}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6469979286193848},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5693873763084412},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5449815988540649},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5356603860855103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5208725929260254},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42612242698669434},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3958437442779541},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28402259945869446},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2557497024536133},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2503906488418579},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.09196484088897705}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts289","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1949/48870268/bioinformatics_28_14_1949.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.954.1471","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.954.1471","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/05/15/bioinformatics.bts289.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2396428","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3389773","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts289","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/14/1949/48870268/bioinformatics_28_14_1949.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G12401395","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G6267471473","display_name":null,"funder_award_id":"Grant-in-Aid","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G7599130655","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G8044579487","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108126551.pdf","grobid_xml":"https://content.openalex.org/works/W2108126551.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1604080812","https://openalex.org/W1980800453","https://openalex.org/W1994803330","https://openalex.org/W2003516452","https://openalex.org/W2014777266","https://openalex.org/W2045313755","https://openalex.org/W2059065455","https://openalex.org/W2076039553","https://openalex.org/W2098656855","https://openalex.org/W2100428244","https://openalex.org/W2107644675","https://openalex.org/W2109175855","https://openalex.org/W2113267877","https://openalex.org/W2116423958","https://openalex.org/W2137015675","https://openalex.org/W2141468602","https://openalex.org/W2158439765","https://openalex.org/W2165253681","https://openalex.org/W2915108429","https://openalex.org/W2917375902","https://openalex.org/W2917431650"],"related_works":["https://openalex.org/W2099982459","https://openalex.org/W1982038138","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W2133294187","https://openalex.org/W4390876228","https://openalex.org/W3192210502","https://openalex.org/W1998222399","https://openalex.org/W4381715389"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"Protein\u2013protein":[2],"interactions":[3,29],"(PPIs)":[4],"are":[5,25],"mediated":[6],"through":[7],"specific":[8],"regions":[9,20,69],"on":[10,61,89,123],"proteins.":[11,32,44],"Some":[12],"proteins":[13,113],"have":[14],"two":[15],"or":[16],"more":[17],"protein":[18],"interacting":[19],"(IRs)":[21],"and":[22,42,52,67],"some":[23],"IRs":[24,39,98],"competitively":[26],"used":[27],"for":[28,37,107],"with":[30,54],"different":[31,50],"IRView":[33,79,103,119],"currently":[34],"contains":[35],"data":[36,46,57],"3417":[38],"in":[40],"human":[41],"mouse":[43],"The":[45,78],"were":[47],"obtained":[48],"from":[49,58],"sources":[51],"combined":[53],"annotated":[55],"region":[56],"InterPro.":[59],"Information":[60],"non-synonymous":[62],"single":[63],"nucleotide":[64],"polymorphism":[65],"sites":[66],"variable":[68],"owing":[70],"to":[71],"alternative":[72],"mRNA":[73],"splicing":[74],"is":[75,120],"also":[76],"included.":[77],"web":[80,125],"interface":[81],"displays":[82],"all":[83],"IR":[84],"data,":[85,88],"including":[86],"user-uploaded":[87],"reference":[90],"sequences":[91],"so":[92],"that":[93],"the":[94,112,115,124],"positional":[95],"relationship":[96],"between":[97,111],"can":[99],"be":[100,105],"easily":[101],"understood.":[102],"should":[104],"useful":[106],"analyzing":[108],"underlying":[109],"relationships":[110],"behind":[114],"PPI":[116],"networks.":[117],"Availability:":[118],"publicly":[121],"available":[122],"at":[126],"http://ir.hgc.jp/.":[127],"Contact:":[128],"nekoneko@ims.u-tokyo.ac.jp":[129]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
