{"id":"https://openalex.org/W2138243987","doi":"https://doi.org/10.1093/bioinformatics/bts258","title":"graph2tab, a library to convert experimental workflow graphs into tabular formats","display_name":"graph2tab, a library to convert experimental workflow graphs into tabular formats","publication_year":2012,"publication_date":"2012-05-03","ids":{"openalex":"https://openalex.org/W2138243987","doi":"https://doi.org/10.1093/bioinformatics/bts258","mag":"2138243987","pmid":"https://pubmed.ncbi.nlm.nih.gov/22556367"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts258","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts258","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1665/48878732/bioinformatics_28_12_1665.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1665/48878732/bioinformatics_28_12_1665.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090339186","display_name":"Marco Brandizi","orcid":"https://orcid.org/0000-0002-5427-2496"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Marco Brandizi","raw_affiliation_strings":["1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"],"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I40120149","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041480057","display_name":"Natalja Kurbatova","orcid":"https://orcid.org/0000-0002-3973-2909"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Natalja Kurbatova","raw_affiliation_strings":["1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"],"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I40120149","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074485826","display_name":"U\u011fis Sarkans","orcid":"https://orcid.org/0000-0001-9227-8488"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ugis Sarkans","raw_affiliation_strings":["1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"],"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I40120149","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018395535","display_name":"Philippe Rocca\u2010Serra","orcid":"https://orcid.org/0000-0001-9853-5668"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Philippe Rocca-Serra","raw_affiliation_strings":["1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"],"affiliations":[{"raw_affiliation_string":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I40120149","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5090339186"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I40120149","https://openalex.org/I87048295"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4763,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.88963035,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"28","issue":"12","first_page":"1665","last_page":"1667"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8459819555282593},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8213950395584106},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7885890603065491},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6384215354919434},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5530974864959717},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5271981358528137},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.47655752301216125},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.47048142552375793},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4613175094127655},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4434257745742798},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4138692319393158},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4121585786342621},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37638652324676514},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3448912799358368},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32329708337783813},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.06800633668899536}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8459819555282593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8213950395584106},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7885890603065491},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6384215354919434},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5530974864959717},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5271981358528137},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.47655752301216125},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.47048142552375793},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4613175094127655},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4434257745742798},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4138692319393158},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4121585786342621},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37638652324676514},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3448912799358368},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32329708337783813},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.06800633668899536},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts258","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts258","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1665/48878732/bioinformatics_28_12_1665.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22556367","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22556367","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3371871","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3371871","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts258","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts258","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1665/48878732/bioinformatics_28_12_1665.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G412979241","display_name":null,"funder_award_id":"BB/I000771/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5456076942","display_name":"'Omics Data Sharing: the Investigation / Study / Assay (ISA) Infrastructure","funder_award_id":"BB/I000771/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G651559499","display_name":null,"funder_award_id":"BB/I025840/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138243987.pdf","grobid_xml":"https://content.openalex.org/works/W2138243987.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1586029166","https://openalex.org/W1824345394","https://openalex.org/W2000446057","https://openalex.org/W2002531683","https://openalex.org/W2014993890","https://openalex.org/W2024858956","https://openalex.org/W2100453203","https://openalex.org/W2129301079","https://openalex.org/W2130430745","https://openalex.org/W2130542009","https://openalex.org/W2136704415","https://openalex.org/W2160042082","https://openalex.org/W2163281669","https://openalex.org/W6638786133","https://openalex.org/W6650884150"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W3131163342","https://openalex.org/W2166271660","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2002770077","https://openalex.org/W2361728394","https://openalex.org/W2352631095","https://openalex.org/W3081644756"],"abstract_inverted_index":{"The":[0],"library":[1],"source":[2],"code":[3],"and":[4],"documentation":[5],"are":[6],"available":[7],"at":[8],"http://github.com/ISA-tools/graph2tab.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
