{"id":"https://openalex.org/W2108976255","doi":"https://doi.org/10.1093/bioinformatics/bts236","title":"Xenome\u2014a tool for classifying reads from xenograft samples","display_name":"Xenome\u2014a tool for classifying reads from xenograft samples","publication_year":2012,"publication_date":"2012-06-09","ids":{"openalex":"https://openalex.org/W2108976255","doi":"https://doi.org/10.1093/bioinformatics/bts236","mag":"2108976255","pmid":"https://pubmed.ncbi.nlm.nih.gov/22689758"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts236","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i172/48875568/bioinformatics_28_12_i172.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i172/48875568/bioinformatics_28_12_i172.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018655162","display_name":"Thomas Conway","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Thomas Conway","raw_affiliation_strings":["1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and Monash Institute of Medical Research, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I60733029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046963746","display_name":"Jeremy Wazny","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jeremy Wazny","raw_affiliation_strings":["1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018478843","display_name":"Andrew Bromage","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Andrew Bromage","raw_affiliation_strings":["1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109868543","display_name":"Martin J. Tymms","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Martin Tymms","raw_affiliation_strings":["1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005477835","display_name":"Dhanya Sooraj","orcid":"https://orcid.org/0000-0002-3176-3305"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dhanya Sooraj","raw_affiliation_strings":["1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052143564","display_name":"Elizabeth D. Williams","orcid":"https://orcid.org/0000-0002-3364-6655"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Elizabeth D. Williams","raw_affiliation_strings":["1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020223445","display_name":"Bryan Beresford\u2010Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Bryan Beresford-Smith","raw_affiliation_strings":["1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"NICTA Victoria Research Laboratory, Department of Computer Science and Software Engineering, The University of Melbourne, Parkville and 2Monash Institute of Medical Research, Monash University, Clayton, Australia","institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018655162"],"corresponding_institution_ids":["https://openalex.org/I165779595","https://openalex.org/I42894916","https://openalex.org/I56590836","https://openalex.org/I60733029"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.10064045,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"28","issue":"12","first_page":"i172","last_page":"i178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.41260001063346863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.41260001063346863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.18279999494552612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.05820000171661377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5939271450042725},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.584518313407898},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5827252864837646},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.5345999598503113},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38493046164512634},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23896166682243347},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13753777742385864},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09897246956825256}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5939271450042725},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.584518313407898},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5827252864837646},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.5345999598503113},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38493046164512634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23896166682243347},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13753777742385864},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09897246956825256}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014183","descriptor_name":"Transplantation, Heterologous","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014183","descriptor_name":"Transplantation, Heterologous","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014183","descriptor_name":"Transplantation, Heterologous","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/bts236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts236","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i172/48875568/bioinformatics_28_12_i172.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22689758","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22689758","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:eprints.qut.edu.au:77759","is_oa":true,"landing_page_url":"https://eprints.qut.edu.au/77759/1/Conway%2C_Bioinformatics_2012.pdf","pdf_url":"https://eprints.qut.edu.au/77759/1/Conway%2C_Bioinformatics_2012.pdf","source":{"id":"https://openalex.org/S4306402607","display_name":"QUT ePrints (Queensland University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I160993911","host_organization_name":"Queensland University of Technology","host_organization_lineage":["https://openalex.org/I160993911"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Contribution to Journal"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/264181","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/264181","pdf_url":"http://hdl.handle.net/11343/264181","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2378088","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3371868","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/29653088","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Xenome-a_tool_for_classifying_reads_from_xenograft_samples/29653088","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"mag:2108976255","is_oa":false,"landing_page_url":"https://eprints.qut.edu.au/77759/","pdf_url":null,"source":{"id":"https://openalex.org/S4306510308","display_name":"Faculty of Health; Institute of Health and Biomedical Innovation","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Faculty of Health; Institute of Health and Biomedical Innovation","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts236","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i172/48875568/bioinformatics_28_12_i172.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7689438616","display_name":"How does cancer spread?","funder_award_id":"519539","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320306163","display_name":"Prostate Cancer Foundation","ror":"https://ror.org/01npwtv09"},{"id":"https://openalex.org/F4320310369","display_name":"National ICT Australia","ror":"https://ror.org/03q397159"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320370","display_name":"Prostate Cancer Foundation of Australia","ror":"https://ror.org/02kna3n95"},{"id":"https://openalex.org/F4320322858","display_name":"State Government of Victoria","ror":"https://ror.org/02xvc5r05"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108976255.pdf","grobid_xml":"https://content.openalex.org/works/W2108976255.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2007550813","https://openalex.org/W2063007091","https://openalex.org/W2077300005","https://openalex.org/W2097065948","https://openalex.org/W2098832713","https://openalex.org/W2111601859","https://openalex.org/W2133531097","https://openalex.org/W2141458291","https://openalex.org/W2147354890","https://openalex.org/W2154503441","https://openalex.org/W2159640103","https://openalex.org/W2161546116","https://openalex.org/W2162454456","https://openalex.org/W2907919037","https://openalex.org/W2912601938","https://openalex.org/W6641128955","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2121964616","https://openalex.org/W2798293223","https://openalex.org/W1631109438","https://openalex.org/W3083416430","https://openalex.org/W2984855079","https://openalex.org/W2104052851","https://openalex.org/W2055335889","https://openalex.org/W3193743240","https://openalex.org/W1562006861","https://openalex.org/W2532808087","https://openalex.org/W2949395034","https://openalex.org/W3044958744","https://openalex.org/W2756085100","https://openalex.org/W2150635649","https://openalex.org/W2061537056","https://openalex.org/W2893222042","https://openalex.org/W2323326409","https://openalex.org/W3018603462","https://openalex.org/W2112876600","https://openalex.org/W2136170412"],"abstract_inverted_index":{"MOTIVATION:":[0],"Shotgun":[1],"sequence":[2,59],"read":[3,26,60],"data":[4,68],"derived":[5],"from":[6,15,21,69,83],"xenograft":[7,74],"material":[8],"contains":[9],"a":[10,43],"mixture":[11,27],"of":[12,57],"reads":[13,19],"arising":[14,20],"the":[16,22,25,30],"host":[17],"and":[18,54,72],"graft.":[23],"Classifying":[24],"to":[28,37],"separate":[29],"two":[31],"allows":[32],"for":[33,80],"more":[34],"precise":[35],"analysis":[36],"be":[38],"performed.":[39],"RESULTS:":[40],"We":[41,62],"present":[42],"technique,":[44],"with":[45],"an":[46],"associated":[47],"tool":[48],"Xenome,":[49],"which":[50],"performs":[51],"fast,":[52],"accurate":[53],"specific":[55],"classification":[56],"xenograft-derived":[58],"data.":[61],"have":[63],"evaluated":[64],"it":[65],"on":[66],"RNA-Seq":[67],"human,":[70],"mouse":[71],"human-in-mouse":[73],"datasets.":[75],"AVAILABILITY:":[76],"Xenome":[77],"is":[78],"available":[79],"non-commercial":[81],"use":[82],"http://www.nicta.com.au/bioinformatics.":[84]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
