{"id":"https://openalex.org/W2132318428","doi":"https://doi.org/10.1093/bioinformatics/bts225","title":"Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss","display_name":"Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss","publication_year":2012,"publication_date":"2012-06-09","ids":{"openalex":"https://openalex.org/W2132318428","doi":"https://doi.org/10.1093/bioinformatics/bts225","mag":"2132318428","pmid":"https://pubmed.ncbi.nlm.nih.gov/22689773"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts225","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts225","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i283/48880395/bioinformatics_28_12_i283.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i283/48880395/bioinformatics_28_12_i283.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024793976","display_name":"Mukul S. Bansal","orcid":"https://orcid.org/0000-0003-0039-2596"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]},{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mukul S. Bansal","raw_affiliation_strings":["1 Computer Science and Artificial Intelligence Laboratory, 2Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 3Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science and Artificial Intelligence Laboratory, 2Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 3Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA","institution_ids":["https://openalex.org/I63966007","https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091119492","display_name":"Eric J. Alm","orcid":"https://orcid.org/0000-0001-8294-9364"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric J. Alm","raw_affiliation_strings":["1 Computer Science and Artificial Intelligence Laboratory, 2Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 3Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science and Artificial Intelligence Laboratory, 2Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 3Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA","institution_ids":["https://openalex.org/I63966007","https://openalex.org/I107606265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089977648","display_name":"Manolis Kellis","orcid":"https://orcid.org/0000-0001-7113-9630"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manolis Kellis","raw_affiliation_strings":["1 Computer Science and Artificial Intelligence Laboratory, 2Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 3Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA"],"affiliations":[{"raw_affiliation_string":"1 Computer Science and Artificial Intelligence Laboratory, 2Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA and 3Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA","institution_ids":["https://openalex.org/I63966007","https://openalex.org/I107606265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024793976"],"corresponding_institution_ids":["https://openalex.org/I107606265","https://openalex.org/I63966007"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.3949,"has_fulltext":false,"cited_by_count":221,"citation_normalized_percentile":{"value":0.98103583,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"28","issue":"12","first_page":"i283","last_page":"i291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9157000184059143,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.844788134098053},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.6669362783432007},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6220815777778625},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.5253968834877014},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.510880172252655},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.5044029951095581},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4673628807067871},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.45747873187065125},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4528433382511139},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43202126026153564},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2815665006637573},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.264005184173584},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1892976462841034}],"concepts":[{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.844788134098053},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.6669362783432007},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6220815777778625},{"id":"https://openalex.org/C2776838516","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.5253968834877014},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.510880172252655},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5044029951095581},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4673628807067871},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.45747873187065125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4528433382511139},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43202126026153564},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2815665006637573},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.264005184173584},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1892976462841034},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017353","descriptor_name":"Gene Deletion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts225","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts225","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i283/48880395/bioinformatics_28_12_i283.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22689773","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22689773","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dspace.mit.edu:1721.1/72150","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/72150","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"http://purl.org/eprint/type/JournalArticle"},{"id":"pmh:oai:europepmc.org:2378077","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3371857","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts225","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts225","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i283/48880395/bioinformatics_28_12_i283.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132318428.pdf","grobid_xml":"https://content.openalex.org/works/W2132318428.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W92516518","https://openalex.org/W157609093","https://openalex.org/W1573203924","https://openalex.org/W1585496880","https://openalex.org/W1594683133","https://openalex.org/W1677244827","https://openalex.org/W1776424232","https://openalex.org/W1963838724","https://openalex.org/W1964356973","https://openalex.org/W1967580345","https://openalex.org/W1970691969","https://openalex.org/W1970909551","https://openalex.org/W1983084296","https://openalex.org/W1987354819","https://openalex.org/W1992140809","https://openalex.org/W1992584622","https://openalex.org/W2007850812","https://openalex.org/W2008252897","https://openalex.org/W2032603188","https://openalex.org/W2034206612","https://openalex.org/W2046039468","https://openalex.org/W2061646232","https://openalex.org/W2065375138","https://openalex.org/W2066393903","https://openalex.org/W2067547496","https://openalex.org/W2076385002","https://openalex.org/W2090619251","https://openalex.org/W2091918228","https://openalex.org/W2093999627","https://openalex.org/W2100091570","https://openalex.org/W2107387420","https://openalex.org/W2108366237","https://openalex.org/W2109368213","https://openalex.org/W2111697442","https://openalex.org/W2112755610","https://openalex.org/W2117000771","https://openalex.org/W2118268187","https://openalex.org/W2121562498","https://openalex.org/W2123317206","https://openalex.org/W2124908487","https://openalex.org/W2128520958","https://openalex.org/W2132023322","https://openalex.org/W2132553324","https://openalex.org/W2133880039","https://openalex.org/W2135281627","https://openalex.org/W2144454528","https://openalex.org/W2145100181","https://openalex.org/W2148231054","https://openalex.org/W2162282699","https://openalex.org/W2178423356","https://openalex.org/W2262894278","https://openalex.org/W2752885492","https://openalex.org/W2991771055","https://openalex.org/W3106188618","https://openalex.org/W3145128584","https://openalex.org/W4230073781","https://openalex.org/W4231886136","https://openalex.org/W4240584342","https://openalex.org/W4246219036","https://openalex.org/W6603739306","https://openalex.org/W6606317737","https://openalex.org/W6634264963","https://openalex.org/W6635042414","https://openalex.org/W6638112516","https://openalex.org/W6648366911","https://openalex.org/W6661926884","https://openalex.org/W6673659086","https://openalex.org/W6677017098","https://openalex.org/W6685474928"],"related_works":["https://openalex.org/W2022927779","https://openalex.org/W2086569686","https://openalex.org/W1914610732","https://openalex.org/W3126460685","https://openalex.org/W3025364102","https://openalex.org/W2999254484","https://openalex.org/W2002623332","https://openalex.org/W3040603050","https://openalex.org/W1970221653","https://openalex.org/W2810780526"],"abstract_inverted_index":{"Our":[0],"programs":[1],"can":[2],"be":[3],"freely":[4],"downloaded":[5],"from":[6],"http://compbio.mit.edu/ranger-dtl/.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":24},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":23},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}