{"id":"https://openalex.org/W2168220711","doi":"https://doi.org/10.1093/bioinformatics/bts209","title":"MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins","display_name":"MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins","publication_year":2012,"publication_date":"2012-06-09","ids":{"openalex":"https://openalex.org/W2168220711","doi":"https://doi.org/10.1093/bioinformatics/bts209","mag":"2168220711","pmid":"https://pubmed.ncbi.nlm.nih.gov/22689782"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts209","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts209","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i75/48883829/bioinformatics_28_12_i75.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i75/48883829/bioinformatics_28_12_i75.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018072442","display_name":"Fatemeh Miri Disfani","orcid":null},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":false,"raw_author_name":"Fatemeh Miri Disfani","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002545282","display_name":"Wei-Lun Hsu","orcid":"https://orcid.org/0000-0002-3998-9181"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":false,"raw_author_name":"Wei-Lun Hsu","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040777177","display_name":"Marcin J. Mizianty","orcid":null},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":false,"raw_author_name":"Marcin J. Mizianty","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091785779","display_name":"Christopher J. Oldfield","orcid":"https://orcid.org/0000-0002-3362-2047"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":false,"raw_author_name":"Christopher J. Oldfield","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011869206","display_name":"Bin Xue","orcid":"https://orcid.org/0000-0002-6344-0623"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":false,"raw_author_name":"Bin Xue","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017746551","display_name":"A. Keith Dunker","orcid":"https://orcid.org/0000-0002-0744-5243"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":false,"raw_author_name":"A. Keith Dunker","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083199032","display_name":"Vladimir N. Uversky","orcid":"https://orcid.org/0000-0002-4037-5857"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":false,"raw_author_name":"Vladimir N. Uversky","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088423732","display_name":"Lukasz Kurgan","orcid":"https://orcid.org/0000-0002-7749-0314"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I4210112128","display_name":"Institute for Biological Instrumentation","ror":"https://ror.org/01tyr1g37","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210112128","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CA","RU","US"],"is_corresponding":true,"raw_author_name":"Lukasz Kurgan","raw_affiliation_strings":["1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Electrical and Computer Engineering, University of Alberta, Edmonton, T6G 2V4, Canada, 2Center for Computational Biology and Bioinformatics and Department of Biochemistry and Molecular Biology, Indiana University, Indianapolis, 46202, USA 3Department of Molecular Medicine, University of South Florida, Tampa, 33612, USA and 4Institute for Biological Instrumentation, Russian Academy of Sciences, Pushchino, 142290, Russia","institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5088423732"],"corresponding_institution_ids":["https://openalex.org/I1313323035","https://openalex.org/I154425047","https://openalex.org/I2613432","https://openalex.org/I4210112128","https://openalex.org/I55769427"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":10.4321,"has_fulltext":true,"cited_by_count":372,"citation_normalized_percentile":{"value":0.99025471,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"28","issue":"12","first_page":"i75","last_page":"i83"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.5157999992370605,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.5157999992370605,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.15410000085830688,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.09369999915361404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6205868124961853},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5890006422996521},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5481130480766296},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5385725498199463},{"id":"https://openalex.org/keywords/intrinsically-disordered-proteins","display_name":"Intrinsically disordered proteins","score":0.445074200630188},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39273887872695923},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3228115439414978},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2627151310443878},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15258383750915527}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6205868124961853},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5890006422996521},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5481130480766296},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5385725498199463},{"id":"https://openalex.org/C2778815515","wikidata":"https://www.wikidata.org/wiki/Q3408242","display_name":"Intrinsically disordered proteins","level":2,"score":0.445074200630188},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39273887872695923},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3228115439414978},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2627151310443878},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15258383750915527}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/bts209","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts209","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i75/48883829/bioinformatics_28_12_i75.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22689782","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22689782","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/49110","is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/49110","pdf_url":"https://scholarworks.indianapolis.iu.edu/bitstreams/9f086cda-72ab-4ff2-a9f9-acc9b3191238/download","source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:digitalcommons.usf.edu:mme_facpub-1787","is_oa":true,"landing_page_url":"https://digitalcommons.usf.edu/mme_facpub/615","pdf_url":null,"source":{"id":"https://openalex.org/S4377196272","display_name":"Digital Commons - University of South Florida (University of South Florida)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2613432","host_organization_name":"University of South Florida","host_organization_lineage":["https://openalex.org/I2613432"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Molecular Medicine Faculty Publications","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2378062","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3371841","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts209","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts209","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/i75/48883829/bioinformatics_28_12_i75.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1374411652","display_name":"DisProt Database:   A Central Repository of Information on Intrinsically Disordered Proteins","funder_award_id":"0849803","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4701932246","display_name":null,"funder_award_id":"298328","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G532781835","display_name":null,"funder_award_id":"EF 0849803","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6253568314","display_name":null,"funder_award_id":"R01 LM007688-01A1","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7801669361","display_name":null,"funder_award_id":"R01 LM007688-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8703922506","display_name":null,"funder_award_id":"R01 LM007688","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322337","display_name":"Killam Trusts","ror":"https://ror.org/021cbtn85"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334801","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168220711.pdf","grobid_xml":"https://content.openalex.org/works/W2168220711.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1578400757","https://openalex.org/W1588000118","https://openalex.org/W1971449260","https://openalex.org/W1971943180","https://openalex.org/W1980857900","https://openalex.org/W1985788649","https://openalex.org/W1989235034","https://openalex.org/W1994151152","https://openalex.org/W1996423252","https://openalex.org/W2002329847","https://openalex.org/W2008708467","https://openalex.org/W2015292449","https://openalex.org/W2018006954","https://openalex.org/W2022188338","https://openalex.org/W2027035874","https://openalex.org/W2027971820","https://openalex.org/W2031772330","https://openalex.org/W2038415161","https://openalex.org/W2040022355","https://openalex.org/W2040549215","https://openalex.org/W2041938888","https://openalex.org/W2043338013","https://openalex.org/W2059957083","https://openalex.org/W2070252217","https://openalex.org/W2071425899","https://openalex.org/W2084333983","https://openalex.org/W2085037886","https://openalex.org/W2087937056","https://openalex.org/W2092920038","https://openalex.org/W2097606916","https://openalex.org/W2101953406","https://openalex.org/W2102956364","https://openalex.org/W2103743266","https://openalex.org/W2109872885","https://openalex.org/W2110128290","https://openalex.org/W2111374837","https://openalex.org/W2113985551","https://openalex.org/W2115652057","https://openalex.org/W2117640066","https://openalex.org/W2118585731","https://openalex.org/W2120744225","https://openalex.org/W2124707779","https://openalex.org/W2126064524","https://openalex.org/W2132720084","https://openalex.org/W2134544170","https://openalex.org/W2138039051","https://openalex.org/W2150467183","https://openalex.org/W2153971450","https://openalex.org/W2154524143","https://openalex.org/W2156407548","https://openalex.org/W2156494890","https://openalex.org/W2158714788","https://openalex.org/W2168514491","https://openalex.org/W2169802764","https://openalex.org/W2321247274","https://openalex.org/W2322304557","https://openalex.org/W6641045400","https://openalex.org/W6677656871"],"related_works":["https://openalex.org/W4293203577","https://openalex.org/W4288038979","https://openalex.org/W2964159616","https://openalex.org/W2969721268","https://openalex.org/W2300545781","https://openalex.org/W2069098917","https://openalex.org/W2084314845","https://openalex.org/W2946244273","https://openalex.org/W2383104153","https://openalex.org/W2077487109"],"abstract_inverted_index":{"MOTIVATION:":[0],"Molecular":[1],"recognition":[2],"features":[3,122],"(MoRFs)":[4],"are":[5,24,101,199,217],"short":[6],"binding":[7],"regions":[8,14,161,178],"located":[9],"within":[10],"longer":[11],"intrinsically":[12],"disordered":[13,160],"that":[15,50,147,153,162,173,194],"bind":[16],"to":[17,82,167,202,232],"protein":[18,54],"partners":[19],"via":[20],"disorder-to-order":[21],"transitions.":[22],"MoRFs":[23,41,52,81],"implicated":[25],"in":[26,94,221],"important":[27],"processes":[28],"including":[29],"signaling":[30],"and":[31,72,84,134,139,156,225,228],"regulation.":[32],"However,":[33],"only":[34],"a":[35,59,76,91,107,114,168,210],"limited":[36],"number":[37],"of":[38,47,79,118,131,214],"experimentally":[39],"validated":[40],"is":[42],"known,":[43],"which":[44,64,95,112,158],"motivates":[45],"development":[46],"computational":[48],"methods":[49],"predict":[51],"from":[53],"chains.":[55],"RESULTS:":[56],"We":[57,74,171,186,207],"introduce":[58],"new":[60],"MoRF":[61,67,177,205],"predictor,":[62],"MoRFpred,":[63],"identifies":[65],"all":[66],"types":[68],"(\u03b1,":[69],"\u03b2,":[70],"coil":[71],"complex).":[73],"develop":[75],"comprehensive":[77],"dataset":[78],"annotated":[80],"build":[83],"empirically":[85],"compare":[86],"our":[87,174],"method.":[88],"MoRFpred":[89,148],"utilizes":[90],"novel":[92],"design":[93],"annotations":[96],"generated":[97,105],"by":[98,106,219],"sequence":[99,181],"alignment":[100],"fused":[102],"with":[103,183,191,196],"predictions":[104,195,224],"Support":[108],"Vector":[109],"Machine":[110],"(SVM),":[111],"uses":[113],"custom":[115],"designed":[116],"set":[117],"sequence-derived":[119,212],"features.":[120],"The":[121],"provide":[123],"information":[124],"about":[125],"evolutionary":[126],"profiles,":[127],"selected":[128],"physiochemical":[129],"properties":[130],"amino":[132],"acids,":[133],"predicted":[135,175],"disorder,":[136],"solvent":[137],"accessibility":[138],"B-factors.":[140],"Empirical":[141],"evaluation":[142],"on":[143],"several":[144],"datasets":[145],"shows":[146],"outperforms":[149],"related":[150],"methods:":[151],"\u03b1-MoRF-Pred":[152],"predicts":[154],"\u03b1-MoRFs":[155],"ANCHOR":[157],"finds":[159],"become":[163],"ordered":[164],"when":[165,230],"bound":[166],"globular":[169],"partner.":[170],"show":[172],"(new)":[176],"have":[179],"non-random":[180],"similarity":[182],"native":[184],"MoRFs.":[185,215],"use":[187],"this":[188],"observation":[189],"along":[190],"the":[192,222,235],"fact":[193],"higher":[197,226],"probability":[198],"more":[200],"accurate":[201],"identify":[203,209],"putative":[204],"regions.":[206],"also":[208],"few":[211],"hallmarks":[213],"They":[216],"characterized":[218],"dips":[220],"disorder":[223],"hydrophobicity":[227],"stability":[229],"compared":[231],"adjacent":[233],"(in":[234],"chain)":[236],"residues.":[237],"AVAILABILITY:":[238],"http://biomine.ece.ualberta.ca/MoRFpred/;":[239],"http://biomine.ece.ualberta.ca/MoRFpred/Supplement.pdf.":[240]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":25},{"year":2020,"cited_by_count":28},{"year":2019,"cited_by_count":39},{"year":2018,"cited_by_count":31},{"year":2017,"cited_by_count":41},{"year":2016,"cited_by_count":31},{"year":2015,"cited_by_count":25},{"year":2014,"cited_by_count":27},{"year":2013,"cited_by_count":27},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
