{"id":"https://openalex.org/W2139355108","doi":"https://doi.org/10.1093/bioinformatics/bts197","title":"Tachyon search speeds up retrieval of similar sequences by several orders of magnitude","display_name":"Tachyon search speeds up retrieval of similar sequences by several orders of magnitude","publication_year":2012,"publication_date":"2012-04-23","ids":{"openalex":"https://openalex.org/W2139355108","doi":"https://doi.org/10.1093/bioinformatics/bts197","mag":"2139355108","pmid":"https://pubmed.ncbi.nlm.nih.gov/22531216"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts197","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts197","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005837549","display_name":"Joshua Tan","orcid":"https://orcid.org/0000-0002-6661-6372"},"institutions":[{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Joshua Tan","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087311479","display_name":"Durga Kuchibhatla","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Durga Kuchibhatla","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031963437","display_name":"Fernanda L. Sirota","orcid":"https://orcid.org/0000-0002-7322-4676"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Fernanda L. Sirota","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057277568","display_name":"Westley Sherman","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Westley A. Sherman","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039653867","display_name":"Tobias Gattermayer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Tobias Gattermayer","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044253558","display_name":"Chia Yee Kwoh","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chia Yee Kwoh","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007579711","display_name":"Frank Eisenhaber","orcid":"https://orcid.org/0000-0002-9599-5420"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Frank Eisenhaber","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105939298","display_name":"Georg Schneider","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Georg Schneider","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019975803","display_name":"Sebastian Maurer\u2010Stroh","orcid":"https://orcid.org/0000-0003-0813-9640"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Sebastian Maurer-Stroh","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I4210148498","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I115228651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5005837549"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.182,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.77986809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"12","first_page":"1645","last_page":"1646"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/magnitude","display_name":"Magnitude (astronomy)","score":0.8546512126922607},{"id":"https://openalex.org/keywords/tachyon","display_name":"Tachyon","score":0.5768935084342957},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4367039203643799},{"id":"https://openalex.org/keywords/earthquake-magnitude","display_name":"Earthquake magnitude","score":0.42735984921455383},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3929802477359772},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3857004642486572},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.21967849135398865},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.19528234004974365},{"id":"https://openalex.org/keywords/mathematical-physics","display_name":"Mathematical physics","score":0.10332763195037842}],"concepts":[{"id":"https://openalex.org/C126691448","wikidata":"https://www.wikidata.org/wiki/Q2028919","display_name":"Magnitude (astronomy)","level":2,"score":0.8546512126922607},{"id":"https://openalex.org/C42458899","wikidata":"https://www.wikidata.org/wiki/Q41995","display_name":"Tachyon","level":2,"score":0.5768935084342957},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4367039203643799},{"id":"https://openalex.org/C2992890811","wikidata":"https://www.wikidata.org/wiki/Q500062","display_name":"Earthquake magnitude","level":3,"score":0.42735984921455383},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3929802477359772},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3857004642486572},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.21967849135398865},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.19528234004974365},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.10332763195037842},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C99844830","wikidata":"https://www.wikidata.org/wiki/Q102441924","display_name":"Scaling","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts197","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts197","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22531216","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22531216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dr.ntu.edu.sg:10356/95996","is_oa":false,"landing_page_url":"http://hdl.handle.net/10220/10780","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2378053","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3371831","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts197","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts197","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139355108.pdf","grobid_xml":"https://content.openalex.org/works/W2139355108.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W53898165","https://openalex.org/W1513332069","https://openalex.org/W2096525273","https://openalex.org/W2102502076","https://openalex.org/W2114049512","https://openalex.org/W2117813757","https://openalex.org/W2120772351","https://openalex.org/W2122210493","https://openalex.org/W2136145671","https://openalex.org/W2158714788","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W4230606671","https://openalex.org/W4244606935","https://openalex.org/W4293196852","https://openalex.org/W6602161028","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2369780909","https://openalex.org/W4303986761","https://openalex.org/W2376418092","https://openalex.org/W2347855177","https://openalex.org/W3205312058","https://openalex.org/W1997167987","https://openalex.org/W2362623611","https://openalex.org/W2196764151","https://openalex.org/W1587514404","https://openalex.org/W2334419245"],"abstract_inverted_index":{"The":[0],"tool":[1],"is":[2],"publicly":[3],"accessible":[4],"as":[5],"a":[6],"webserver":[7],"at":[8],"http://tachyon.bii.a-star.edu.sg":[9],"and":[10],"can":[11],"also":[12],"be":[13],"accessed":[14],"programmatically":[15],"through":[16],"SOAP.":[17]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
