{"id":"https://openalex.org/W2139355108","doi":"https://doi.org/10.1093/bioinformatics/bts197","title":"Tachyon search speeds up retrieval of similar sequences by several orders of magnitude","display_name":"Tachyon search speeds up retrieval of similar sequences by several orders of magnitude","publication_year":2012,"publication_date":"2012-04-23","ids":{"openalex":"https://openalex.org/W2139355108","doi":"https://doi.org/10.1093/bioinformatics/bts197","mag":"2139355108","pmid":"https://pubmed.ncbi.nlm.nih.gov/22531216"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts197","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts197","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005837549","display_name":"Joshua Tan","orcid":"https://orcid.org/0000-0002-6661-6372"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Joshua Tan","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087311479","display_name":"Durga Kuchibhatla","orcid":null},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Durga Kuchibhatla","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031963437","display_name":"Fernanda L. Sirota","orcid":"https://orcid.org/0000-0002-7322-4676"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Fernanda L. Sirota","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057277568","display_name":"Westley Sherman","orcid":null},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Westley A. Sherman","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039653867","display_name":"Tobias Gattermayer","orcid":null},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Tobias Gattermayer","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044253558","display_name":"Chia Yee Kwoh","orcid":null},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chia Yee Kwoh","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007579711","display_name":"Frank Eisenhaber","orcid":"https://orcid.org/0000-0002-9599-5420"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Frank Eisenhaber","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105939298","display_name":"Georg Schneider","orcid":null},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Georg Schneider","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019975803","display_name":"Sebastian Maurer\u2010Stroh","orcid":"https://orcid.org/0000-0003-0813-9640"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I3004594783","display_name":"Institute of High Performance Computing","ror":"https://ror.org/02n0ejh50","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3004594783","https://openalex.org/I91275662"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Sebastian Maurer-Stroh","raw_affiliation_strings":["1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Institute (BII), Agency for Science Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, 138671, 2Institute of High Performance Computing (IHPC), Agency for Science Technology and Research (A*STAR), 1 Fusionopolis Way, #16-16 Connexis, 138632, 3Department of Biological Sciences (DBS), National University of Singapore (NUS), 8 Medical Drive 4, 117597, 4School of Computer Engineering (SCE), Nanyang Technological University (NTU), 50 Nanyang Drive, 637553 and 5School of Biological Sciences (SBS), Nanyang Technological University (NTU), 60 Nanyang Drive, 637551, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5019975803"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I3004594783","https://openalex.org/I4210148498"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1048,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.76422697,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"12","first_page":"1645","last_page":"1646"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/magnitude","display_name":"Magnitude (astronomy)","score":0.8546512126922607},{"id":"https://openalex.org/keywords/tachyon","display_name":"Tachyon","score":0.5768935084342957},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4367039203643799},{"id":"https://openalex.org/keywords/earthquake-magnitude","display_name":"Earthquake magnitude","score":0.42735984921455383},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3929802477359772},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3857004642486572},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.21967849135398865},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.19528234004974365},{"id":"https://openalex.org/keywords/mathematical-physics","display_name":"Mathematical physics","score":0.10332763195037842}],"concepts":[{"id":"https://openalex.org/C126691448","wikidata":"https://www.wikidata.org/wiki/Q2028919","display_name":"Magnitude (astronomy)","level":2,"score":0.8546512126922607},{"id":"https://openalex.org/C42458899","wikidata":"https://www.wikidata.org/wiki/Q41995","display_name":"Tachyon","level":2,"score":0.5768935084342957},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4367039203643799},{"id":"https://openalex.org/C2992890811","wikidata":"https://www.wikidata.org/wiki/Q500062","display_name":"Earthquake magnitude","level":3,"score":0.42735984921455383},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3929802477359772},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3857004642486572},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.21967849135398865},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.19528234004974365},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.10332763195037842},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C99844830","wikidata":"https://www.wikidata.org/wiki/Q102441924","display_name":"Scaling","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts197","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts197","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22531216","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22531216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2378053","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3371831","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:dr.ntu.edu.sg:10356/95996","is_oa":false,"landing_page_url":"http://hdl.handle.net/10220/10780","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts197","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts197","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/12/1645/16905352/bts197.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139355108.pdf","grobid_xml":"https://content.openalex.org/works/W2139355108.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W53898165","https://openalex.org/W1513332069","https://openalex.org/W2096525273","https://openalex.org/W2102502076","https://openalex.org/W2114049512","https://openalex.org/W2117813757","https://openalex.org/W2120772351","https://openalex.org/W2122210493","https://openalex.org/W2136145671","https://openalex.org/W2158714788","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W4230606671","https://openalex.org/W4244606935","https://openalex.org/W4293196852","https://openalex.org/W6602161028","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2369780909","https://openalex.org/W4303986761","https://openalex.org/W2376418092","https://openalex.org/W2347855177","https://openalex.org/W3205312058","https://openalex.org/W1997167987","https://openalex.org/W2362623611","https://openalex.org/W2196764151","https://openalex.org/W1587514404","https://openalex.org/W2334419245"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"The":[2,51],"usage":[3],"of":[4,14],"current":[5],"sequence":[6],"search":[7],"tools":[8],"becomes":[9],"increasingly":[10],"slower":[11],"as":[12,56],"databases":[13],"protein":[15,29],"sequences":[16,30],"continue":[17],"to":[18],"grow":[19],"exponentially.":[20],"Tachyon,":[21],"a":[22,41,57],"new":[23],"algorithm":[24],"that":[25],"identifies":[26],"closely":[27],"related":[28],"~200":[31],"times":[32],"faster":[33],"than":[34],"standard":[35],"BLAST,":[36],"circumvents":[37],"this":[38],"limitation":[39],"with":[40],"reduced":[42],"database":[43],"and":[44,49,61],"oligopeptide":[45],"matching":[46],"heuristic.":[47],"Availability":[48],"implementation:":[50],"tool":[52],"is":[53],"publicly":[54],"accessible":[55],"webserver":[58],"at":[59,77],"http://tachyon.bii.a-star.edu.sg":[60],"can":[62],"also":[63],"be":[64],"accessed":[65],"programmatically":[66],"through":[67],"SOAP.":[68],"Contact:":[69],"sebastianms@bii.a-star.edu.sg":[70],"Supplementary":[71,73],"information:":[72],"data":[74],"are":[75],"available":[76],"the":[78],"Bioinformatics":[79],"online.":[80]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
