{"id":"https://openalex.org/W2099917952","doi":"https://doi.org/10.1093/bioinformatics/bts171","title":"CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks","display_name":"CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks","publication_year":2012,"publication_date":"2012-04-06","ids":{"openalex":"https://openalex.org/W2099917952","doi":"https://doi.org/10.1093/bioinformatics/bts171","mag":"2099917952","pmid":"https://pubmed.ncbi.nlm.nih.gov/22492646"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/11/1549/741530/bts171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/11/1549/741530/bts171.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048317569","display_name":"G\u00e1bor Szederk\u00e9nyi","orcid":"https://orcid.org/0000-0003-4199-6089"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"funder","lineage":["https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210117195","display_name":"Institute for Computer Science and Control","ror":"https://ror.org/0249v7n71","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210117195","https://openalex.org/I7597260"]}],"countries":["ES","HU"],"is_corresponding":true,"raw_author_name":"G\u00e1bor Szederk\u00e9nyi","raw_affiliation_strings":["1 (Bio)Process Engineering Group, IIM-CSIC, Spanish National Research Council, C/Eduardo Cabello, 6, 36208 Vigo, Spain, 2Process Control Research Group, Systems and Control Laboratory, Computer and Automation Research Institute of the Hungarian Academy of Sciences (MTA SZTAKI), Kende u. 13-17, H-1111, Budapest, Hungary"],"affiliations":[{"raw_affiliation_string":"1 (Bio)Process Engineering Group, IIM-CSIC, Spanish National Research Council, C/Eduardo Cabello, 6, 36208 Vigo, Spain, 2Process Control Research Group, Systems and Control Laboratory, Computer and Automation Research Institute of the Hungarian Academy of Sciences (MTA SZTAKI), Kende u. 13-17, H-1111, Budapest, Hungary","institution_ids":["https://openalex.org/I4210117195","https://openalex.org/I134820265","https://openalex.org/I7597260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090264675","display_name":"Julio R. Banga","orcid":"https://orcid.org/0000-0002-4245-0320"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"funder","lineage":["https://openalex.org/I7597260"]},{"id":"https://openalex.org/I4210117195","display_name":"Institute for Computer Science and Control","ror":"https://ror.org/0249v7n71","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210117195","https://openalex.org/I7597260"]}],"countries":["ES","HU"],"is_corresponding":false,"raw_author_name":"Julio R. Banga","raw_affiliation_strings":["1 (Bio)Process Engineering Group, IIM-CSIC, Spanish National Research Council, C/Eduardo Cabello, 6, 36208 Vigo, Spain, 2Process Control Research Group, Systems and Control Laboratory, Computer and Automation Research Institute of the Hungarian Academy of Sciences (MTA SZTAKI), Kende u. 13-17, H-1111, Budapest, Hungary"],"affiliations":[{"raw_affiliation_string":"1 (Bio)Process Engineering Group, IIM-CSIC, Spanish National Research Council, C/Eduardo Cabello, 6, 36208 Vigo, Spain, 2Process Control Research Group, Systems and Control Laboratory, Computer and Automation Research Institute of the Hungarian Academy of Sciences (MTA SZTAKI), Kende u. 13-17, H-1111, Budapest, Hungary","institution_ids":["https://openalex.org/I4210117195","https://openalex.org/I134820265","https://openalex.org/I7597260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030090184","display_name":"Antonio A. Alonso","orcid":"https://orcid.org/0000-0001-8203-1799"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210117195","display_name":"Institute for Computer Science and Control","ror":"https://ror.org/0249v7n71","country_code":"HU","type":"facility","lineage":["https://openalex.org/I4210117195","https://openalex.org/I7597260"]},{"id":"https://openalex.org/I7597260","display_name":"Hungarian Academy of Sciences","ror":"https://ror.org/02ks8qq67","country_code":"HU","type":"funder","lineage":["https://openalex.org/I7597260"]}],"countries":["ES","HU"],"is_corresponding":false,"raw_author_name":"Antonio A. Alonso","raw_affiliation_strings":["1 (Bio)Process Engineering Group, IIM-CSIC, Spanish National Research Council, C/Eduardo Cabello, 6, 36208 Vigo, Spain, 2Process Control Research Group, Systems and Control Laboratory, Computer and Automation Research Institute of the Hungarian Academy of Sciences (MTA SZTAKI), Kende u. 13-17, H-1111, Budapest, Hungary"],"affiliations":[{"raw_affiliation_string":"1 (Bio)Process Engineering Group, IIM-CSIC, Spanish National Research Council, C/Eduardo Cabello, 6, 36208 Vigo, Spain, 2Process Control Research Group, Systems and Control Laboratory, Computer and Automation Research Institute of the Hungarian Academy of Sciences (MTA SZTAKI), Kende u. 13-17, H-1111, Budapest, Hungary","institution_ids":["https://openalex.org/I4210117195","https://openalex.org/I134820265","https://openalex.org/I7597260"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5048317569"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210117195","https://openalex.org/I7597260"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6723,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.69130124,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"28","issue":"11","first_page":"1549","last_page":"1550"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.8667215704917908},{"id":"https://openalex.org/keywords/identifiability","display_name":"Identifiability","score":0.8267869353294373},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7540459632873535},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.6142618060112},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6105584502220154},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.565538227558136},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5262609720230103},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5109350085258484},{"id":"https://openalex.org/keywords/software-tool","display_name":"Software tool","score":0.4867982566356659},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4784855246543884},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4684313237667084},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4319143295288086},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3106948137283325},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.28212374448776245},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2523314952850342},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.20223262906074524},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09910520911216736}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.8667215704917908},{"id":"https://openalex.org/C122770356","wikidata":"https://www.wikidata.org/wiki/Q1656753","display_name":"Identifiability","level":2,"score":0.8267869353294373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7540459632873535},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.6142618060112},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6105584502220154},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.565538227558136},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5262609720230103},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5109350085258484},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.4867982566356659},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4784855246543884},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4684313237667084},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4319143295288086},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3106948137283325},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.28212374448776245},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2523314952850342},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.20223262906074524},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09910520911216736},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.0},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/11/1549/741530/bts171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22492646","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22492646","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/64629","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/64629","pdf_url":null,"source":{"id":"https://openalex.org/S4306401639","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo"},{"id":"pmh:oai:eprints.sztaki.hu:7472","is_oa":false,"landing_page_url":"http://eprints.sztaki.hu/7472/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401907","display_name":"SZTAKI Publication Repository (Hungarian Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I7597260","host_organization_name":"Hungarian Academy of Sciences","host_organization_lineage":["https://openalex.org/I7597260"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"ISI Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts171","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts171","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/11/1549/741530/bts171.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099917952.pdf","grobid_xml":"https://content.openalex.org/works/W2099917952.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W127845727","https://openalex.org/W1556001544","https://openalex.org/W1599969036","https://openalex.org/W1638844320","https://openalex.org/W2015886941","https://openalex.org/W2016440384","https://openalex.org/W2016931470","https://openalex.org/W2019264851","https://openalex.org/W2036546758","https://openalex.org/W2066718612","https://openalex.org/W2094781369","https://openalex.org/W2122950891","https://openalex.org/W2158942485","https://openalex.org/W6654547971"],"related_works":["https://openalex.org/W2115343689","https://openalex.org/W2772955743","https://openalex.org/W2353433747","https://openalex.org/W2095148239","https://openalex.org/W2092118003","https://openalex.org/W2127913883","https://openalex.org/W2106116918","https://openalex.org/W2046154060","https://openalex.org/W2099917952","https://openalex.org/W2112005387"],"abstract_inverted_index":{"The":[0,11],"CRNreals":[1],"toolbox":[2,12],"and":[3,20,24,28],"the":[4,15],"associated":[5],"documentation":[6],"are":[7],"available":[8],"at":[9],"http://www.iim.csic.es/~gingproc/CRNreals/.":[10],"runs":[13],"under":[14],"popular":[16],"MATLAB":[17],"computational":[18],"environment":[19],"supports":[21],"several":[22],"free":[23],"commercial":[25],"linear":[26,31],"programming":[27,32],"mixed":[29],"integer":[30],"solvers.":[33]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
