{"id":"https://openalex.org/W2157266858","doi":"https://doi.org/10.1093/bioinformatics/bts140","title":"AutoLabDB: a substantial open source database schema to support a high-throughput automated laboratory","display_name":"AutoLabDB: a substantial open source database schema to support a high-throughput automated laboratory","publication_year":2012,"publication_date":"2012-03-29","ids":{"openalex":"https://openalex.org/W2157266858","doi":"https://doi.org/10.1093/bioinformatics/bts140","mag":"2157266858","pmid":"https://pubmed.ncbi.nlm.nih.gov/22467910"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts140","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts140","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001359182","display_name":"Andrew C. Sparkes","orcid":"https://orcid.org/0000-0002-7622-6570"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Sparkes","raw_affiliation_strings":["Department of Computer Science, Aberystwyth University, Penglais, Aberystwyth, SY23 3DB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aberystwyth University, Penglais, Aberystwyth, SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072262751","display_name":"Amanda Clare","orcid":"https://orcid.org/0000-0001-8315-3659"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Amanda Clare","raw_affiliation_strings":["Department of Computer Science, Aberystwyth University, Penglais, Aberystwyth, SY23 3DB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aberystwyth University, Penglais, Aberystwyth, SY23 3DB, UK","institution_ids":["https://openalex.org/I16038530"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072262751"],"corresponding_institution_ids":["https://openalex.org/I16038530"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4771,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89085855,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"28","issue":"10","first_page":"1390","last_page":"1397"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7844898700714111},{"id":"https://openalex.org/keywords/database-schema","display_name":"Database schema","score":0.654395341873169},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6161099076271057},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.590289831161499},{"id":"https://openalex.org/keywords/schema-migration","display_name":"Schema migration","score":0.5230149626731873},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5091549754142761},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.47129714488983154},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4333886504173279},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4247649908065796},{"id":"https://openalex.org/keywords/database-design","display_name":"Database design","score":0.42349737882614136},{"id":"https://openalex.org/keywords/semi-structured-model","display_name":"Semi-structured model","score":0.24347922205924988},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.24310752749443054},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15433403849601746}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7844898700714111},{"id":"https://openalex.org/C30775581","wikidata":"https://www.wikidata.org/wiki/Q632285","display_name":"Database schema","level":3,"score":0.654395341873169},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6161099076271057},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.590289831161499},{"id":"https://openalex.org/C153440673","wikidata":"https://www.wikidata.org/wiki/Q7431119","display_name":"Schema migration","level":5,"score":0.5230149626731873},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5091549754142761},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.47129714488983154},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4333886504173279},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4247649908065796},{"id":"https://openalex.org/C148840519","wikidata":"https://www.wikidata.org/wiki/Q1049878","display_name":"Database design","level":2,"score":0.42349737882614136},{"id":"https://openalex.org/C56310702","wikidata":"https://www.wikidata.org/wiki/Q2269281","display_name":"Semi-structured model","level":4,"score":0.24347922205924988},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.24310752749443054},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15433403849601746}],"mesh":[{"descriptor_ui":"D007753","descriptor_name":"Laboratories","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007753","descriptor_name":"Laboratories","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007753","descriptor_name":"Laboratories","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008331","descriptor_name":"Management Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008331","descriptor_name":"Management Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008331","descriptor_name":"Management Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts140","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts140","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22467910","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22467910","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.836.9860","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.836.9860","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2012/03/25/bioinformatics.bts140.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.850.7244","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.850.7244","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/28/10/1390.full.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.550000011920929,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3351861893","display_name":null,"funder_award_id":"BB/D00425X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5246289129","display_name":null,"funder_award_id":"BB/F008228/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320032","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W126846983","https://openalex.org/W396554631","https://openalex.org/W1515789039","https://openalex.org/W1601495365","https://openalex.org/W1995582586","https://openalex.org/W2010118510","https://openalex.org/W2010804701","https://openalex.org/W2014446045","https://openalex.org/W2014830756","https://openalex.org/W2024233526","https://openalex.org/W2033377040","https://openalex.org/W2091223191","https://openalex.org/W2103365019","https://openalex.org/W2108177663","https://openalex.org/W2112262482","https://openalex.org/W2114804859","https://openalex.org/W2118206414","https://openalex.org/W2119565742","https://openalex.org/W2120724048","https://openalex.org/W2170982529","https://openalex.org/W2185907055","https://openalex.org/W2988119170","https://openalex.org/W4210483668","https://openalex.org/W4238584892","https://openalex.org/W6635610719","https://openalex.org/W6677989707","https://openalex.org/W6685143397"],"related_works":["https://openalex.org/W2911644013","https://openalex.org/W2335156424","https://openalex.org/W1508463152","https://openalex.org/W2405544841","https://openalex.org/W3013699262","https://openalex.org/W2108349789","https://openalex.org/W1509177098","https://openalex.org/W2292344213","https://openalex.org/W2169247002","https://openalex.org/W2506830159"],"abstract_inverted_index":{"We":[0],"describe":[1],"the":[2,5,10,42,52,62,66],"design":[3],"of":[4,54],"database":[6,29],"schema":[7],"(AutoLabDB),":[8],"detailing":[9],"main":[11],"features":[12],"and":[13,64],"describing":[14],"why":[15],"we":[16],"believe":[17],"it":[18,47],"will":[19],"be":[20],"relevant":[21],"to":[22,33,59],"LIMS":[23,56],"manufacturers":[24],"or":[25],"custom":[26],"builders.":[27],"This":[28],"has":[30,48],"been":[31,49],"developed":[32],"support":[34],"two":[35],"large":[36],"automated":[37],"Robot":[38],"Scientist":[39],"systems":[40],"over":[41],"last":[43],"5":[44],"years,":[45],"where":[46],"used":[50],"as":[51],"basis":[53],"an":[55],"that":[57],"helps":[58],"manage":[60],"both":[61],"laboratory":[63],"all":[65],"experiment":[67],"data":[68],"produced.":[69]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}