{"id":"https://openalex.org/W2127821584","doi":"https://doi.org/10.1093/bioinformatics/bts139","title":"MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations","display_name":"MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations","publication_year":2012,"publication_date":"2012-03-21","ids":{"openalex":"https://openalex.org/W2127821584","doi":"https://doi.org/10.1093/bioinformatics/bts139","mag":"2127821584","pmid":"https://pubmed.ncbi.nlm.nih.gov/22437851"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts139","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts139","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1278/48878720/bioinformatics_28_9_1278.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1278/48878720/bioinformatics_28_9_1278.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051114531","display_name":"Pau Andrio","orcid":"https://orcid.org/0000-0003-2116-3880"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Pau Andrio","raw_affiliation_strings":["1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557","https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014322466","display_name":"Carles Fenollosa","orcid":null},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carles Fenollosa","raw_affiliation_strings":["1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557","https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002873993","display_name":"Damjan Cicin-Sain","orcid":null},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Damjan Cicin-Sain","raw_affiliation_strings":["1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557","https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006399866","display_name":"Modesto Orozco","orcid":"https://orcid.org/0000-0002-8608-3278"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Modesto Orozco","raw_affiliation_strings":["1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557","https://openalex.org/I71999127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088134705","display_name":"Josep Llu\u00eds Gelp\u00ed","orcid":"https://orcid.org/0000-0002-0566-7723"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Josep Llu\u00eds Gelp\u00ed","raw_affiliation_strings":["1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Joint IRB-BSC Program on Computational Biology, Institute of Research in Biomedicine, Barcelona Science Park, Josep Samitier 1-5, Barcelona 08028, and Barcelona Supercomputing Center, Jordi Girona 31, Barcelona 08034, 2Structural Bioinformatics Node, National Institute of Bioinformatics, Josep Samitier 1-5, Barcelona 08028, 3Computatinal Bioinformatics Node, National Institute of Bioinformatics, Jordi Girona 31, Barcelona 08034 and 4Department of Biochemistry and Molecular Biology, University of Barcelona, Av. Diagonal 643, Barcelona 08028, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557","https://openalex.org/I71999127"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5051114531"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I71999127","https://openalex.org/I9617848"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.3592,"has_fulltext":true,"cited_by_count":189,"citation_normalized_percentile":{"value":0.93171705,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"28","issue":"9","first_page":"1278","last_page":"1279"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.663100004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.663100004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.06469999998807907,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.056699998676776886,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7981592416763306},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5559454560279846},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48631033301353455},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.48033562302589417},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.447776734828949},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4426242709159851},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.4386344254016876},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.4331305921077728},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4322740435600281},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3156541883945465},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1977936029434204},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11343926191329956}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7981592416763306},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5559454560279846},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48631033301353455},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.48033562302589417},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.447776734828949},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4426242709159851},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.4386344254016876},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.4331305921077728},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4322740435600281},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3156541883945465},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1977936029434204},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11343926191329956}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts139","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts139","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1278/48878720/bioinformatics_28_9_1278.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22437851","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22437851","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts139","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts139","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1278/48878720/bioinformatics_28_9_1278.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127821584.pdf","grobid_xml":"https://content.openalex.org/works/W2127821584.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1493945330","https://openalex.org/W1966078827","https://openalex.org/W1984493861","https://openalex.org/W2029667189","https://openalex.org/W2067337097","https://openalex.org/W2079199763","https://openalex.org/W2079875740","https://openalex.org/W2112712631","https://openalex.org/W2119822484","https://openalex.org/W2137550342","https://openalex.org/W2137653635","https://openalex.org/W2150981663","https://openalex.org/W2169826929","https://openalex.org/W2601797347"],"related_works":["https://openalex.org/W642521392","https://openalex.org/W599814909","https://openalex.org/W2466726934","https://openalex.org/W145675224","https://openalex.org/W2481575356","https://openalex.org/W2503502284","https://openalex.org/W4252337189","https://openalex.org/W3002947890","https://openalex.org/W2466929855","https://openalex.org/W2521554484"],"abstract_inverted_index":{"SUMMARY:":[0],"MDWeb":[1],"and":[2,18,41,55,96,105],"MDMoby":[3],"constitute":[4],"a":[5,84,97],"web-based":[6],"platform":[7,22,78],"to":[8,11,25],"help":[9],"access":[10],"molecular":[12],"dynamics":[13],"(MD)":[14],"in":[15],"the":[16,32,48,65,90,112],"standard":[17],"high-throughput":[19],"regime.":[20],"The":[21,77],"provides":[23,39],"tools":[24],"prepare":[26],"systems":[27],"from":[28,69],"PDB":[29],"structures":[30],"mimicking":[31],"procedures":[33],"followed":[34],"by":[35,64],"human":[36],"experts.":[37],"It":[38],"inputs":[40],"can":[42,108],"send":[43],"simulations":[44],"for":[45,58],"three":[46],"of":[47,60,82,86],"most":[49],"popular":[50],"MD":[51],"packages":[52],"(Amber,":[53],"NAMD":[54],"Gromacs).":[56],"Tools":[57],"analysis":[59],"trajectories,":[61],"either":[62],"provided":[63],"user":[66],"or":[67],"retrieved":[68],"our":[70],"MoDEL":[71],"database":[72],"(http://mmb.pcb.ub.es/MoDEL)":[73],"are":[74],"also":[75],"incorporated.":[76],"has":[79],"two":[80],"ways":[81],"access,":[83],"set":[85],"web-services":[87],"based":[88],"on":[89],"BioMoby":[91],"framework":[92],"(MDMoby),":[93],"programmatically":[94],"accessible":[95],"web":[98,113],"portal":[99],"(MDWeb).":[100],"AVAILABILITY:":[101],"http://mmb.irbbarcelona.org/MDWeb;":[102],"additional":[103],"information":[104],"methodology":[106],"details":[107],"be":[109],"found":[110],"at":[111],"site":[114],"(":[115],"http://mmb.irbbarcelona.org/MDWeb/help.php)":[116]},"counts_by_year":[{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":28},{"year":2020,"cited_by_count":21},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
