{"id":"https://openalex.org/W2112604076","doi":"https://doi.org/10.1093/bioinformatics/bts134","title":"JETTA: junction and exon toolkits for transcriptome analysis","display_name":"JETTA: junction and exon toolkits for transcriptome analysis","publication_year":2012,"publication_date":"2012-03-19","ids":{"openalex":"https://openalex.org/W2112604076","doi":"https://doi.org/10.1093/bioinformatics/bts134","mag":"2112604076","pmid":"https://pubmed.ncbi.nlm.nih.gov/22433281"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts134","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts134","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1274/48877726/bioinformatics_28_9_1274.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1274/48877726/bioinformatics_28_9_1274.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069534195","display_name":"Junhee Seok","orcid":"https://orcid.org/0000-0002-6475-8457"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Junhee Seok","raw_affiliation_strings":["1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA"],"affiliations":[{"raw_affiliation_string":"1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054372507","display_name":"Weihong Xu","orcid":"https://orcid.org/0000-0002-3988-3571"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weihong Xu","raw_affiliation_strings":["1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA"],"affiliations":[{"raw_affiliation_string":"1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034432364","display_name":"Hong Gao","orcid":"https://orcid.org/0000-0002-3050-6462"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong Gao","raw_affiliation_strings":["1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA"],"affiliations":[{"raw_affiliation_string":"1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022830611","display_name":"Ronald W. Davis","orcid":"https://orcid.org/0000-0003-3123-2333"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ronald W. Davis","raw_affiliation_strings":["1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA"],"affiliations":[{"raw_affiliation_string":"1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I4210087915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017701213","display_name":"Wenzhong Xiao","orcid":"https://orcid.org/0000-0003-4944-6380"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenzhong Xiao","raw_affiliation_strings":["1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA"],"affiliations":[{"raw_affiliation_string":"1 Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, 2Department of Statistics, Stanford University, 390 Serra Mall, Stanford, CA 94305 and 3Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I4210087915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069534195"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I97018004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4137,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.89216164,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"28","issue":"9","first_page":"1274","last_page":"1275"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.7239663004875183},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.670562744140625},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6035727262496948},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5719048380851746},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5448241233825684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.529024600982666},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.5166893005371094},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5011703968048096},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5007238388061523},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.4651748836040497},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4106203317642212},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35384654998779297},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33249157667160034},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32208335399627686},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2954411208629608},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20439943671226501},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08537265658378601},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.06193476915359497}],"concepts":[{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.7239663004875183},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.670562744140625},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6035727262496948},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5719048380851746},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5448241233825684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.529024600982666},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5166893005371094},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5011703968048096},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5007238388061523},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4651748836040497},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4106203317642212},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35384654998779297},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33249157667160034},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32208335399627686},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2954411208629608},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20439943671226501},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08537265658378601},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.06193476915359497},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008099","descriptor_name":"Liver","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009132","descriptor_name":"Muscles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009132","descriptor_name":"Muscles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009132","descriptor_name":"Muscles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts134","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts134","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1274/48877726/bioinformatics_28_9_1274.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22433281","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22433281","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2637797","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3338022","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts134","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts134","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/9/1274/48877726/bioinformatics_28_9_1274.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4145933526","display_name":null,"funder_award_id":"HG000205","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5584321946","display_name":null,"funder_award_id":"GM06211","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8541593691","display_name":null,"funder_award_id":"P01-HG000205","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2112604076.pdf","grobid_xml":"https://content.openalex.org/works/W2112604076.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1967656072","https://openalex.org/W2038437697","https://openalex.org/W2098832713","https://openalex.org/W2100448568","https://openalex.org/W2111788381","https://openalex.org/W2117949279","https://openalex.org/W2125957298","https://openalex.org/W2141458291","https://openalex.org/W2152129478","https://openalex.org/W2153519169","https://openalex.org/W2155804510","https://openalex.org/W2158085979","https://openalex.org/W2170989872","https://openalex.org/W2172189627"],"related_works":["https://openalex.org/W2151954452","https://openalex.org/W1976843764","https://openalex.org/W2053656597","https://openalex.org/W2520430930","https://openalex.org/W2564462691","https://openalex.org/W2022596900","https://openalex.org/W2112189313","https://openalex.org/W3200077090","https://openalex.org/W2733300197","https://openalex.org/W2998711935"],"abstract_inverted_index":{"JETTA":[0],"and":[1],"its":[2],"demonstrations":[3],"are":[4],"freely":[5],"available":[6],"at":[7],"http://igenomed.stanford.edu/~junhee/JETTA/index.html":[8]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":7}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}