{"id":"https://openalex.org/W2158423544","doi":"https://doi.org/10.1093/bioinformatics/bts104","title":"WHIDE\u2014a web tool for visual data mining colocation patterns in multivariate bioimages","display_name":"WHIDE\u2014a web tool for visual data mining colocation patterns in multivariate bioimages","publication_year":2012,"publication_date":"2012-03-05","ids":{"openalex":"https://openalex.org/W2158423544","doi":"https://doi.org/10.1093/bioinformatics/bts104","mag":"2158423544","pmid":"https://pubmed.ncbi.nlm.nih.gov/22390938"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts104","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1143/48930478/bioinformatics_28_8_1143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1143/48930478/bioinformatics_28_8_1143.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006755247","display_name":"Jan K\u00f6lling","orcid":"https://orcid.org/0000-0003-3957-2412"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan K\u00f6lling","raw_affiliation_strings":["Faculty of Technology, Bielefeld University, Bielefeld, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Technology, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059961439","display_name":"Daniel Langenk\u00e4mper","orcid":"https://orcid.org/0000-0003-1857-5040"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Daniel Langenk\u00e4mper","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK"],"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I20121455","https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082308063","display_name":"Sylvie Abouna","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Sylvie Abouna","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK"],"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I20121455","https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027146712","display_name":"Michael Khan","orcid":"https://orcid.org/0000-0002-8591-384X"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Michael Khan","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK"],"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I20121455","https://openalex.org/I39555362"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033485866","display_name":"Tim W. Nattkemper","orcid":"https://orcid.org/0000-0002-7986-1158"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Tim W. Nattkemper","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK"],"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, PO Box D-33501, Bielefeld, Germany and 2School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I20121455","https://openalex.org/I39555362"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5006755247"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.8845,"has_fulltext":false,"cited_by_count":49,"citation_normalized_percentile":{"value":0.96484848,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"28","issue":"8","first_page":"1143","last_page":"1150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9639999866485596,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7362865209579468},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7040138840675354},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48874926567077637},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.4759894609451294},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46963855624198914},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.44665923714637756},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37682512402534485}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7362865209579468},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7040138840675354},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48874926567077637},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.4759894609451294},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46963855624198914},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.44665923714637756},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37682512402534485}],"mesh":[{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D003110","descriptor_name":"Colonic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013059","descriptor_name":"Spectrum Analysis, Raman","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013059","descriptor_name":"Spectrum Analysis, Raman","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013059","descriptor_name":"Spectrum Analysis, Raman","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bts104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts104","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1143/48930478/bioinformatics_28_8_1143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22390938","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22390938","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2331114","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3324520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pub.librecat.org:2481783","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/2481783","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"K\u00f6lling J, Langenk\u00e4mper D, Sylvie A, Michale K, Nattkemper TW. WHIDE - A web tool for visual data mining colocation patterns in multivariate bioimages. <em>Bioinformatics</em>. 2012;28(8):1143-1150.","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts104","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1143/48930478/bioinformatics_28_8_1143.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313464","display_name":"Medical and Life Sciences Research Fund","ror":null},{"id":"https://openalex.org/F4320320279","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158423544.pdf","grobid_xml":"https://content.openalex.org/works/W2158423544.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1483072991","https://openalex.org/W1522816040","https://openalex.org/W1532469653","https://openalex.org/W1564393679","https://openalex.org/W1823329909","https://openalex.org/W1924389045","https://openalex.org/W1935003084","https://openalex.org/W1972034516","https://openalex.org/W1976648974","https://openalex.org/W1991928089","https://openalex.org/W2004801541","https://openalex.org/W2021964673","https://openalex.org/W2025320861","https://openalex.org/W2026506423","https://openalex.org/W2035098389","https://openalex.org/W2039537951","https://openalex.org/W2041877620","https://openalex.org/W2074791534","https://openalex.org/W2074947364","https://openalex.org/W2079257256","https://openalex.org/W2099244020","https://openalex.org/W2114319457","https://openalex.org/W2128339343","https://openalex.org/W2129388272","https://openalex.org/W2136861779","https://openalex.org/W2138199375","https://openalex.org/W2158307450","https://openalex.org/W2332972329","https://openalex.org/W2801830100","https://openalex.org/W4250305371","https://openalex.org/W4250947857","https://openalex.org/W6628919931","https://openalex.org/W6631844121","https://openalex.org/W6640459131","https://openalex.org/W6675077989"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W4285411112","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2085033728","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2594414941"],"abstract_inverted_index":{"The":[0],"WHIDE":[1],"tool":[2],"can":[3],"be":[4],"accessed":[5],"via":[6],"the":[7],"BioIMAX":[8],"website":[9],"http://ani.cebitec.uni-bielefeld.de/BioIMAX/;":[10],"Login:":[11],"whidetestuser;":[12],"Password:":[13],"whidetest.":[14]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}