{"id":"https://openalex.org/W2152219892","doi":"https://doi.org/10.1093/bioinformatics/bts098","title":"High-quality sequence clustering guided by network topology and multiple alignment likelihood","display_name":"High-quality sequence clustering guided by network topology and multiple alignment likelihood","publication_year":2012,"publication_date":"2012-02-25","ids":{"openalex":"https://openalex.org/W2152219892","doi":"https://doi.org/10.1093/bioinformatics/bts098","mag":"2152219892","pmid":"https://pubmed.ncbi.nlm.nih.gov/22368255"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts098","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1078/48930549/bioinformatics_28_8_1078.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1078/48930549/bioinformatics_28_8_1078.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035082713","display_name":"Vincent Mi\u00e8le","orcid":"https://orcid.org/0000-0001-7584-0088"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Vincent Miele","raw_affiliation_strings":["Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France. vincent.miele@univ-lyon1.fr","LSG - Laboratoire Statistique et G\u00e9nome (23 boulevard de France 91 037 \u00c9vry, France - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire Biom\u00e9trie et Biologie Evolutive, Universit\u00e9 de Lyon, Universit\u00e9 Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France. vincent.miele@univ-lyon1.fr","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LSG - Laboratoire Statistique et G\u00e9nome (23 boulevard de France 91 037 \u00c9vry, France - France)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005165880","display_name":"Simon Penel","orcid":"https://orcid.org/0000-0003-1550-5477"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Simon Penel","raw_affiliation_strings":["Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","LBBE - Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558 (43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LBBE - Laboratoire de Biom\u00e9trie et Biologie Evolutive - UMR 5558 (43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011691995","display_name":"Vincent Daubin","orcid":"https://orcid.org/0000-0001-8269-9430"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Daubin","raw_affiliation_strings":["Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","BPGE - Bioinformatique, phylog\u00e9nie et g\u00e9nomique \u00e9volutive [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BPGE - Bioinformatique, phylog\u00e9nie et g\u00e9nomique \u00e9volutive [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056996972","display_name":"Franck Picard","orcid":"https://orcid.org/0000-0001-8084-5481"},"institutions":[{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Franck Picard","raw_affiliation_strings":["Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","Statistique en grande dimension pour la g\u00e9nomique [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Statistique en grande dimension pour la g\u00e9nomique [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102011944","display_name":"Daniel Kahn","orcid":"https://orcid.org/0000-0001-8093-0854"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Daniel Kahn","raw_affiliation_strings":["Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","BPGE - Bioinformatique, phylog\u00e9nie et g\u00e9nomique \u00e9volutive [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BPGE - Bioinformatique, phylog\u00e9nie et g\u00e9nomique \u00e9volutive [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036099891","display_name":"Laurent Duret","orcid":"https://orcid.org/0000-0003-2836-3463"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Duret","raw_affiliation_strings":["Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","BPGE - Bioinformatique, phylog\u00e9nie et g\u00e9nomique \u00e9volutive [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire Biomtrie et Biologie Evolutive, Universit de Lyon, Universit Lyon 1, CNRS, INRA, UMR5558, Villeurbanne, France","institution_ids":["https://openalex.org/I4210135640","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BPGE - Bioinformatique, phylog\u00e9nie et g\u00e9nomique \u00e9volutive [LBBE] (LBBE\r\n43 Bld du 11 Novembre 1918 69622 VILLEURBANNE CEDEX - France)","institution_ids":["https://openalex.org/I4210135640"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5035082713"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210135640"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4791,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.81850729,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"28","issue":"8","first_page":"1078","last_page":"1085"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6779943108558655},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5834013223648071},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.572772741317749},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.5401380062103271},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4941122829914093},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4896112084388733},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.48601752519607544},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4750009775161743},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.4496793746948242},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.4326241910457611},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4244215488433838},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4090054929256439},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3636541962623596},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34573620557785034},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2788313627243042},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24499467015266418},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23703324794769287},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.10561519861221313}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6779943108558655},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5834013223648071},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.572772741317749},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.5401380062103271},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4941122829914093},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4896112084388733},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.48601752519607544},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4750009775161743},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.4496793746948242},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.4326241910457611},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4244215488433838},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4090054929256439},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3636541962623596},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34573620557785034},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2788313627243042},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24499467015266418},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23703324794769287},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.10561519861221313},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts098","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1078/48930549/bioinformatics_28_8_1078.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22368255","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22368255","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-00965711v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00965711","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2012, 28 (8), pp.1078-85. &#x27E8;10.1093/bioinformatics/bts098&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts098","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts098","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1078/48930549/bioinformatics_28_8_1078.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G353549786","display_name":"Network Motifs","funder_award_id":"ANR-08-BLAN-0304","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4455010248","display_name":null,"funder_award_id":"ANR-10-BINF-01-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7389578636","display_name":"IMproving Protein Annotation and Co-ordination through Technology","funder_award_id":"213037","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152219892.pdf","grobid_xml":"https://content.openalex.org/works/W2152219892.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W118013854","https://openalex.org/W1971421925","https://openalex.org/W1987299841","https://openalex.org/W1995452806","https://openalex.org/W2002364557","https://openalex.org/W2006909053","https://openalex.org/W2009570821","https://openalex.org/W2013067928","https://openalex.org/W2014719716","https://openalex.org/W2029833898","https://openalex.org/W2036696353","https://openalex.org/W2058720919","https://openalex.org/W2060502711","https://openalex.org/W2082819719","https://openalex.org/W2091922579","https://openalex.org/W2100726289","https://openalex.org/W2109820980","https://openalex.org/W2110734043","https://openalex.org/W2113561798","https://openalex.org/W2124166542","https://openalex.org/W2127048411","https://openalex.org/W2131681506","https://openalex.org/W2132023322","https://openalex.org/W2135152200","https://openalex.org/W2137597742","https://openalex.org/W2138730338","https://openalex.org/W2139271731","https://openalex.org/W2141885858","https://openalex.org/W2144799688","https://openalex.org/W2157552136","https://openalex.org/W2158714788","https://openalex.org/W2159675211","https://openalex.org/W2161855013","https://openalex.org/W2169929748","https://openalex.org/W3099768174","https://openalex.org/W3102641634","https://openalex.org/W4210623056","https://openalex.org/W4245668478","https://openalex.org/W6680215730"],"related_works":["https://openalex.org/W2129361631","https://openalex.org/W2079145549","https://openalex.org/W2903170547","https://openalex.org/W4389053053","https://openalex.org/W2009133913","https://openalex.org/W2015399150","https://openalex.org/W2061567716","https://openalex.org/W2275032899","https://openalex.org/W2498689255","https://openalex.org/W2032757954"],"abstract_inverted_index":{"The":[0],"Python":[1],"software":[2],"HiFiX":[3],"is":[4],"freely":[5],"available":[6],"at":[7],"http://lbbe.univ-lyon1.fr/hifix.":[8]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
