{"id":"https://openalex.org/W2132352688","doi":"https://doi.org/10.1093/bioinformatics/bts084","title":"RNA-Seq Atlas\u2014a reference database for gene expression profiling in normal tissue by next-generation sequencing","display_name":"RNA-Seq Atlas\u2014a reference database for gene expression profiling in normal tissue by next-generation sequencing","publication_year":2012,"publication_date":"2012-02-17","ids":{"openalex":"https://openalex.org/W2132352688","doi":"https://doi.org/10.1093/bioinformatics/bts084","mag":"2132352688","pmid":"https://pubmed.ncbi.nlm.nih.gov/22345621"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts084","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts084","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1184/48930619/bioinformatics_28_8_1184.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1184/48930619/bioinformatics_28_8_1184.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041448704","display_name":"M Krupp","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Markus Krupp","raw_affiliation_strings":["Department of Medicine I, Johannes Gutenberg University, 55131 Mainz, Germany. kruppm@uni-mainz.de","Department of Medicine I, Johannes Gutenberg University, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Medicine I, Johannes Gutenberg University, 55131 Mainz, Germany. kruppm@uni-mainz.de","institution_ids":["https://openalex.org/I197323543"]},{"raw_affiliation_string":"Department of Medicine I, Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102707966","display_name":"Jens U. Marquardt","orcid":"https://orcid.org/0000-0002-8314-2682"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens U. Marquardt","raw_affiliation_strings":["Department of Medicine I and","Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Medicine I and","institution_ids":[]},{"raw_affiliation_string":"Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075617216","display_name":"U\u011fur \u015eahin","orcid":"https://orcid.org/0000-0003-0363-1564"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ugur Sahin","raw_affiliation_strings":["Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I4210149035","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069151214","display_name":"Peter R. Galle","orcid":"https://orcid.org/0000-0001-8294-0992"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter R. Galle","raw_affiliation_strings":["Department of Medicine I and","Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Medicine I and","institution_ids":[]},{"raw_affiliation_string":"Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079846160","display_name":"John C. Castle","orcid":"https://orcid.org/0000-0002-6017-7794"},"institutions":[{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]},{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"John Castle","raw_affiliation_strings":["Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I4210149035","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089643041","display_name":"Andreas Teufel","orcid":"https://orcid.org/0000-0001-7953-8927"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Teufel","raw_affiliation_strings":["Department of Medicine I and","Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Medicine I and","institution_ids":[]},{"raw_affiliation_string":"Department of Medicine I and 2Translational Oncology and Immunology (TRON), Johannes Gutenberg University, 55131 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5041448704"],"corresponding_institution_ids":["https://openalex.org/I197323543"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":9.7969,"has_fulltext":true,"cited_by_count":175,"citation_normalized_percentile":{"value":0.98840575,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"28","issue":"8","first_page":"1184","last_page":"1185"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.5678890943527222},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.553869366645813},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5324535965919495},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.5111790299415588},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4870172142982483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43513602018356323},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4194177985191345},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39593449234962463},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3365612030029297},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2302820384502411},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.1994713544845581}],"concepts":[{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5678890943527222},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.553869366645813},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5324535965919495},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5111790299415588},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4870172142982483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43513602018356323},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4194177985191345},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39593449234962463},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3365612030029297},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2302820384502411},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.1994713544845581}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts084","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts084","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1184/48930619/bioinformatics_28_8_1184.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22345621","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22345621","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts084","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts084","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/8/1184/48930619/bioinformatics_28_8_1184.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322301","display_name":"Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/023b0x485"},{"id":"https://openalex.org/F4320325136","display_name":"Boehringer Ingelheim Stiftung","ror":"https://ror.org/03tx8dq56"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132352688.pdf","grobid_xml":"https://content.openalex.org/works/W2132352688.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1923384484","https://openalex.org/W1976658794","https://openalex.org/W1989076816","https://openalex.org/W1989654707","https://openalex.org/W2019223707","https://openalex.org/W2040607104","https://openalex.org/W2096525273","https://openalex.org/W2100673036","https://openalex.org/W2103017472","https://openalex.org/W2109108939","https://openalex.org/W2115789025","https://openalex.org/W2121374483","https://openalex.org/W2122863289","https://openalex.org/W2137518425","https://openalex.org/W2145241604","https://openalex.org/W2154431984","https://openalex.org/W2164683872","https://openalex.org/W2171777347","https://openalex.org/W2885727518","https://openalex.org/W2915482286","https://openalex.org/W3120676751","https://openalex.org/W4244606935"],"related_works":["https://openalex.org/W2052655934","https://openalex.org/W3002447856","https://openalex.org/W104645380","https://openalex.org/W2027213253","https://openalex.org/W2017047508","https://openalex.org/W2165201120","https://openalex.org/W2023641020","https://openalex.org/W2188530857","https://openalex.org/W2133040682","https://openalex.org/W2331275800"],"abstract_inverted_index":{"http://medicalgenomics.org/rna_seq_atlas.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":26},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":24},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":8}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
