{"id":"https://openalex.org/W2096537696","doi":"https://doi.org/10.1093/bioinformatics/bts071","title":"Automatic recognition of conceptualization zones in scientific articles and two life science applications","display_name":"Automatic recognition of conceptualization zones in scientific articles and two life science applications","publication_year":2012,"publication_date":"2012-02-08","ids":{"openalex":"https://openalex.org/W2096537696","doi":"https://doi.org/10.1093/bioinformatics/bts071","mag":"2096537696","pmid":"https://pubmed.ncbi.nlm.nih.gov/22321698"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/991/48880902/bioinformatics_28_7_991.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/991/48880902/bioinformatics_28_7_991.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007426895","display_name":"Maria Liakata","orcid":"https://orcid.org/0000-0001-5765-0416"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I2751430930","display_name":"Royal Society of Chemistry","ror":"https://ror.org/025sbr097","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2751430930"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["GB","SE"],"is_corresponding":true,"raw_author_name":"Maria Liakata","raw_affiliation_strings":["1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2751430930","https://openalex.org/I1303153112","https://openalex.org/I881427289","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024020888","display_name":"Shyamasree Saha","orcid":"https://orcid.org/0000-0001-8867-1770"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I2751430930","display_name":"Royal Society of Chemistry","ror":"https://ror.org/025sbr097","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2751430930"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["GB","SE"],"is_corresponding":false,"raw_author_name":"Shyamasree Saha","raw_affiliation_strings":["1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2751430930","https://openalex.org/I1303153112","https://openalex.org/I881427289","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014291440","display_name":"Simon Dobnik","orcid":"https://orcid.org/0000-0002-4019-7966"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I2751430930","display_name":"Royal Society of Chemistry","ror":"https://ror.org/025sbr097","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2751430930"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["GB","SE"],"is_corresponding":false,"raw_author_name":"Simon Dobnik","raw_affiliation_strings":["1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2751430930","https://openalex.org/I1303153112","https://openalex.org/I881427289","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052275685","display_name":"Colin Batchelor","orcid":"https://orcid.org/0000-0001-5985-7429"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I2751430930","display_name":"Royal Society of Chemistry","ror":"https://ror.org/025sbr097","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2751430930"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["GB","SE"],"is_corresponding":false,"raw_author_name":"Colin Batchelor","raw_affiliation_strings":["1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2751430930","https://openalex.org/I1303153112","https://openalex.org/I881427289","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I2751430930","display_name":"Royal Society of Chemistry","ror":"https://ror.org/025sbr097","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2751430930"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["GB","SE"],"is_corresponding":false,"raw_author_name":"Dietrich Rebholz-Schuhmann","raw_affiliation_strings":["1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK, 2Rebholz Group, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 3Department of Philosophy, Linguistics and Theory of Science, University of Gothenburg, Gothenburg, 405 30, Sweden and 4Royal Society of Chemistry, Cambridge, Thomas Graham House, Science Park, Milton Road, Cambridge CB4 0WF, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2751430930","https://openalex.org/I1303153112","https://openalex.org/I881427289","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007426895"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I16038530","https://openalex.org/I2751430930","https://openalex.org/I87048295","https://openalex.org/I881427289"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.2831,"has_fulltext":true,"cited_by_count":174,"citation_normalized_percentile":{"value":0.98064481,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"28","issue":"7","first_page":"991","last_page":"1000"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0035000001080334187,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7691928744316101},{"id":"https://openalex.org/keywords/bigram","display_name":"Bigram","score":0.6939789056777954},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.6456184387207031},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6374159455299377},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6339583396911621},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.6203040480613708},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5776598453521729},{"id":"https://openalex.org/keywords/conceptualization","display_name":"Conceptualization","score":0.512846052646637},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4373001158237457},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.43001317977905273},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41561996936798096},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.41015952825546265}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7691928744316101},{"id":"https://openalex.org/C108757681","wikidata":"https://www.wikidata.org/wiki/Q2773912","display_name":"Bigram","level":3,"score":0.6939789056777954},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.6456184387207031},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6374159455299377},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6339583396911621},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.6203040480613708},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5776598453521729},{"id":"https://openalex.org/C90734943","wikidata":"https://www.wikidata.org/wiki/Q17008777","display_name":"Conceptualization","level":2,"score":0.512846052646637},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4373001158237457},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.43001317977905273},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41561996936798096},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.41015952825546265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C137546455","wikidata":"https://www.wikidata.org/wiki/Q3213474","display_name":"Trigram","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/991/48880902/bioinformatics_28_7_991.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22321698","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22321698","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2319960","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3315721","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/991/48880902/bioinformatics_28_7_991.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320319993","display_name":"Leverhulme Trust","ror":"https://ror.org/012mzw131"},{"id":"https://openalex.org/F4320320309","display_name":"Joint Information Systems Committee","ror":"https://ror.org/01rv9gx86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096537696.pdf","grobid_xml":"https://content.openalex.org/works/W2096537696.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W76749362","https://openalex.org/W205532704","https://openalex.org/W273036708","https://openalex.org/W618607536","https://openalex.org/W1480287196","https://openalex.org/W1515842608","https://openalex.org/W1568297139","https://openalex.org/W2001829063","https://openalex.org/W2004761926","https://openalex.org/W2006802446","https://openalex.org/W2017513070","https://openalex.org/W2028473264","https://openalex.org/W2040838629","https://openalex.org/W2050355460","https://openalex.org/W2051649768","https://openalex.org/W2053154970","https://openalex.org/W2076327529","https://openalex.org/W2083566963","https://openalex.org/W2085809930","https://openalex.org/W2101390659","https://openalex.org/W2105897558","https://openalex.org/W2107141268","https://openalex.org/W2110854897","https://openalex.org/W2115516470","https://openalex.org/W2116692665","https://openalex.org/W2118585731","https://openalex.org/W2120587524","https://openalex.org/W2121678130","https://openalex.org/W2123107826","https://openalex.org/W2143589337","https://openalex.org/W2146737815","https://openalex.org/W2153635508","https://openalex.org/W2158291389","https://openalex.org/W2159230276","https://openalex.org/W2168579166","https://openalex.org/W2168652246","https://openalex.org/W2168905447","https://openalex.org/W2171283231","https://openalex.org/W2251672315","https://openalex.org/W2402929825","https://openalex.org/W2442495973","https://openalex.org/W2781804600","https://openalex.org/W2801356492","https://openalex.org/W2911864677","https://openalex.org/W2914431807","https://openalex.org/W4246948003","https://openalex.org/W4250467157","https://openalex.org/W4285719527","https://openalex.org/W6603123688","https://openalex.org/W6608395927","https://openalex.org/W6610009877","https://openalex.org/W6630735327","https://openalex.org/W6657784456","https://openalex.org/W6675247125","https://openalex.org/W6676803185","https://openalex.org/W6677293857","https://openalex.org/W6677656871","https://openalex.org/W6678430481","https://openalex.org/W6681160867","https://openalex.org/W6681296008","https://openalex.org/W6691445279","https://openalex.org/W6713316921"],"related_works":["https://openalex.org/W3173084154","https://openalex.org/W2982021180","https://openalex.org/W2251497876","https://openalex.org/W2241081188","https://openalex.org/W2128567707","https://openalex.org/W159278796","https://openalex.org/W2163278254","https://openalex.org/W1574213390","https://openalex.org/W2145607494","https://openalex.org/W4389523750"],"abstract_inverted_index":{"MOTIVATION:":[0],"Scholarly":[1],"biomedical":[2,128,282],"publications":[3],"report":[4,35],"on":[5,36,162],"the":[6,23,26,52,63,70,77,83,109,133,200,203,214,255,270,274,295],"findings":[7],"of":[8,25,54,73,79,136,165,216,269,276,298,329],"a":[9,14,143,163,184,221,233,327],"research":[10],"investigation.":[11],"Scientists":[12],"use":[13],"well-established":[15],"discourse":[16,72],"structure":[17,53,110],"to":[18,22,49,65,69,113,173,316,321],"relate":[19],"their":[20,29,37,122],"work":[21,287],"state":[24],"art,":[27],"express":[28],"own":[30],"motivation":[31],"and":[32,34,40,105,111,116,121,139,150,158,171,189,197,208,230,249,302,319],"hypotheses":[33,138],"methods,":[38],"results":[39],"conclusions.":[41],"In":[42],"previous":[43],"work,":[44],"we":[45,61,87,231],"have":[46,148,178,190,212],"proposed":[47],"ways":[48],"explicitly":[50],"annotate":[51],"scientific":[55,71,144],"investigations":[56],"in":[57,142,169,280,288],"scholarly":[58],"publications.":[59],"Here":[60],"present":[62,232],"means":[64],"facilitate":[66,127],"automatic":[67,123,181,296],"access":[68],"articles":[74,168,299],"by":[75,131],"automating":[76],"recognition":[78,124],"11":[80],"categories":[81,201],"at":[82,308,347],"sentence":[84,222,243],"level,":[85],"which":[86,333],"call":[88],"Core":[89],"Scientific":[90],"Concepts":[91],"(CoreSCs).":[92],"These":[93],"include:":[94],"Hypothesis,":[95],"Motivation,":[96],"Goal,":[97],"Object,":[98],"Background,":[99],"Method,":[100],"Experiment,":[101],"Model,":[102],"Observation,":[103],"Result":[104],"Conclusion.":[106],"CoreSCs":[107,279,301],"provide":[108],"context":[112],"all":[114],"statements":[115],"relations":[117],"within":[118],"an":[119,264],"article":[120],"can":[125],"greatly":[126],"information":[129,314],"extraction":[130],"characterizing":[132],"different":[134],"types":[135],"facts,":[137],"evidence":[140],"available":[141,306,346],"publication.":[145],"RESULTS:":[146],"We":[147,177,211,272],"trained":[149],"compared":[151],"machine":[152],"learning":[153],"classifiers":[154],"(support":[155],"vector":[156],"machines":[157],"conditional":[159],"random":[160],"fields)":[161],"corpus":[164,328],"265":[166],"full":[167],"biochemistry":[170],"chemistry":[172],"automatically":[174,277],"recognize":[175],"CoreSCs.":[176],"evaluated":[179],"our":[180,336],"classifications":[182],"against":[183],"manually":[185,330],"annotated":[186,331],"gold":[187],"standard,":[188],"achieved":[191],"promising":[192],"accuracies":[193],"with":[194,202,300],"'Experiment',":[195],"'Background'":[196],"'Model'":[198],"being":[199],"highest":[204],"F1-scores":[205],"(76%,":[206],"62%":[207],"53%,":[209],"respectively).":[210],"analysed":[213],"task":[215],"CoreSC":[217,317],"annotation":[218,297,318,322],"both":[219],"from":[220],"classification":[223],"as":[224,226,246,259,284,286,324,326,335],"well":[225,285,325],"sequence":[227],"labelling":[228],"perspective":[229],"detailed":[234,313],"feature":[235],"evaluation.":[236],"The":[237],"most":[238],"discriminative":[239],"features":[240,244,253],"are":[241,345],"local":[242],"such":[245,258],"unigrams,":[247],"bigrams":[248],"grammatical":[250],"dependencies":[251],"while":[252],"encoding":[254],"document":[256],"structure,":[257],"section":[260],"headings,":[261],"also":[262,311],"play":[263],"important":[265],"role":[266],"for":[267,294],"some":[268],"categories.":[271],"discuss":[273],"usefulness":[275],"generated":[278],"two":[281],"applications":[283],"progress.":[289],"AVAILABILITY:":[290],"A":[291],"web-based":[292],"tool":[293],"corresponding":[303],"documentation":[304],"is":[305],"online":[307],"http://www.sapientaproject.com/software":[309],"http://www.sapientaproject.com":[310],"contains":[312],"pertaining":[315],"links":[320],"guidelines":[323],"articles,":[332],"served":[334],"training":[337],"data.":[338],"CONTACT:":[339],"liakata@ebi.ac.uk":[340],"SUPPLEMENTARY":[341],"INFORMATION:":[342],"Supplementary":[343],"data":[344],"Bioinformatics":[348],"online.":[349]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":17},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
