{"id":"https://openalex.org/W2159603617","doi":"https://doi.org/10.1093/bioinformatics/bts064","title":"Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads","display_name":"Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads","publication_year":2012,"publication_date":"2012-02-01","ids":{"openalex":"https://openalex.org/W2159603617","doi":"https://doi.org/10.1093/bioinformatics/bts064","mag":"2159603617","pmid":"https://pubmed.ncbi.nlm.nih.gov/22302574"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/1024/16912730/bts064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/1024/16912730/bts064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062475585","display_name":"Ruping Sun","orcid":"https://orcid.org/0000-0003-3702-9483"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ruping Sun","raw_affiliation_strings":["Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049770701","display_name":"Michael I. Love","orcid":"https://orcid.org/0000-0001-8401-0545"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael I. Love","raw_affiliation_strings":["Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051777669","display_name":"Tomasz \u017bemojtel","orcid":"https://orcid.org/0000-0002-3794-7623"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tomasz Zemojtel","raw_affiliation_strings":["Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109363283","display_name":"Anne-Katrin Emde","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anne-Katrin Emde","raw_affiliation_strings":["Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061531314","display_name":"Ho\u2010Ryun Chung","orcid":"https://orcid.org/0000-0002-4132-0911"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ho-Ryun Chung","raw_affiliation_strings":["Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009628707","display_name":"Martin Vingron","orcid":"https://orcid.org/0000-0002-1765-4241"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Vingron","raw_affiliation_strings":["Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001301955","display_name":"Stefan A. Haas","orcid":"https://orcid.org/0000-0003-3418-3688"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan A. Haas","raw_affiliation_strings":["Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestr. 63\u201373, 14195 Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5062475585"],"corresponding_institution_ids":["https://openalex.org/I4210142260"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3445,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.80320801,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"7","first_page":"1024","last_page":"1025"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breakpoint","display_name":"Breakpoint","score":0.8965736627578735},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6918516159057617},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6051691174507141},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3482432961463928},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1838969886302948},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17205524444580078}],"concepts":[{"id":"https://openalex.org/C206936463","wikidata":"https://www.wikidata.org/wiki/Q634179","display_name":"Breakpoint","level":4,"score":0.8965736627578735},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6918516159057617},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6051691174507141},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3482432961463928},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1838969886302948},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17205524444580078},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138626823","wikidata":"https://www.wikidata.org/wiki/Q916504","display_name":"Chromosomal translocation","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/1024/16912730/bts064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22302574","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22302574","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.mpg.de:item_1702983","is_oa":true,"landing_page_url":"https://hdl.handle.net/11858/00-001M-0000-0014-7B7B-B","pdf_url":"http://hdl.handle.net/11858/00-001M-0000-0014-7B7B-B","source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/7/1024/16912730/bts064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2159603617.pdf","grobid_xml":"https://content.openalex.org/works/W2159603617.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1998120162","https://openalex.org/W2012016911","https://openalex.org/W2032247293","https://openalex.org/W2046601740","https://openalex.org/W2066478438","https://openalex.org/W2083870688","https://openalex.org/W2108234281","https://openalex.org/W2116126626","https://openalex.org/W2143173327","https://openalex.org/W2154397429","https://openalex.org/W2157057843","https://openalex.org/W2168133698"],"related_works":["https://openalex.org/W4385147262","https://openalex.org/W2072660680","https://openalex.org/W2039156006","https://openalex.org/W2116080616","https://openalex.org/W2130027211","https://openalex.org/W1992065723","https://openalex.org/W1992251814","https://openalex.org/W4224227509","https://openalex.org/W4225641618","https://openalex.org/W2773943265"],"abstract_inverted_index":{"Supplementary":[0],"material":[1],"is":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
