{"id":"https://openalex.org/W2161241698","doi":"https://doi.org/10.1093/bioinformatics/bts060","title":"Predicting kinase substrates using conservation of local motif density","display_name":"Predicting kinase substrates using conservation of local motif density","publication_year":2012,"publication_date":"2012-02-01","ids":{"openalex":"https://openalex.org/W2161241698","doi":"https://doi.org/10.1093/bioinformatics/bts060","mag":"2161241698","pmid":"https://pubmed.ncbi.nlm.nih.gov/22302575"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts060","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts060","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://utoronto.scholaris.ca/bitstreams/d934de56-381d-46af-bdc4-879821872f3e/download","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019429362","display_name":"Andy C. W. Lai","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Andy C. W. Lai","raw_affiliation_strings":["Department of Cell and Systems Biology, University of Toronto, Toronto, Canada M5S 3G5"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Systems Biology, University of Toronto, Toronto, Canada M5S 3G5","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048514799","display_name":"Alex N. Nguyen Ba","orcid":"https://orcid.org/0000-0003-1357-6386"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alex N. Nguyen Ba","raw_affiliation_strings":["Department of Cell and Systems Biology, University of Toronto, Toronto, Canada M5S 3G5"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Systems Biology, University of Toronto, Toronto, Canada M5S 3G5","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086545231","display_name":"Alan M Moses","orcid":"https://orcid.org/0000-0003-3118-3121"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alan M. Moses","raw_affiliation_strings":["Department of Cell and Systems Biology, University of Toronto, Toronto, Canada M5S 3G5"],"affiliations":[{"raw_affiliation_string":"Department of Cell and Systems Biology, University of Toronto, Toronto, Canada M5S 3G5","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019429362"],"corresponding_institution_ids":["https://openalex.org/I185261750"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0725,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.7666581,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"28","issue":"7","first_page":"962","last_page":"969"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.572749137878418},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5514248609542847},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.5098882913589478},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49109530448913574},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.41255348920822144},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4089720547199249},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3595035672187805},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33813926577568054},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1668834388256073},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08447358012199402}],"concepts":[{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.572749137878418},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5514248609542847},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.5098882913589478},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49109530448913574},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.41255348920822144},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4089720547199249},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3595035672187805},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33813926577568054},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1668834388256073},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08447358012199402},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017489","descriptor_name":"CDC28 Protein Kinase, S cerevisiae","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017489","descriptor_name":"CDC28 Protein Kinase, S cerevisiae","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017489","descriptor_name":"CDC28 Protein Kinase, S cerevisiae","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts060","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts060","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22302575","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22302575","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:collectionscanada.gc.ca:OTU.1807/31290","is_oa":true,"landing_page_url":"http://hdl.handle.net/1807/31290","pdf_url":"https://utoronto.scholaris.ca/bitstreams/d934de56-381d-46af-bdc4-879821872f3e/download","source":{"id":"https://openalex.org/S4306402307","display_name":"Library and Archives Canada (Government of Canada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2802286613","host_organization_name":"Government of Canada","host_organization_lineage":["https://openalex.org/I2802286613"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"}],"best_oa_location":{"id":"pmh:oai:collectionscanada.gc.ca:OTU.1807/31290","is_oa":true,"landing_page_url":"http://hdl.handle.net/1807/31290","pdf_url":"https://utoronto.scholaris.ca/bitstreams/d934de56-381d-46af-bdc4-879821872f3e/download","source":{"id":"https://openalex.org/S4306402307","display_name":"Library and Archives Canada (Government of Canada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2802286613","host_organization_name":"Government of Canada","host_organization_lineage":["https://openalex.org/I2802286613"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2161241698.pdf","grobid_xml":"https://content.openalex.org/works/W2161241698.grobid-xml"},"referenced_works_count":125,"referenced_works":["https://openalex.org/W85218708","https://openalex.org/W1497941038","https://openalex.org/W1521843029","https://openalex.org/W1525734744","https://openalex.org/W1530194480","https://openalex.org/W1536240214","https://openalex.org/W1570204439","https://openalex.org/W1690889355","https://openalex.org/W1812816875","https://openalex.org/W1821582542","https://openalex.org/W1973194400","https://openalex.org/W1977414640","https://openalex.org/W1978023173","https://openalex.org/W1981419875","https://openalex.org/W1983728585","https://openalex.org/W1986157458","https://openalex.org/W1988967838","https://openalex.org/W1992582537","https://openalex.org/W1994523623","https://openalex.org/W1994762541","https://openalex.org/W1995989434","https://openalex.org/W1998326358","https://openalex.org/W1999811798","https://openalex.org/W2003110507","https://openalex.org/W2003411878","https://openalex.org/W2003967338","https://openalex.org/W2009826707","https://openalex.org/W2010710895","https://openalex.org/W2011199567","https://openalex.org/W2012502505","https://openalex.org/W2013134990","https://openalex.org/W2013853442","https://openalex.org/W2014776147","https://openalex.org/W2015563963","https://openalex.org/W2018275786","https://openalex.org/W2019858779","https://openalex.org/W2019885960","https://openalex.org/W2022446852","https://openalex.org/W2023635398","https://openalex.org/W2024308660","https://openalex.org/W2026074998","https://openalex.org/W2028161249","https://openalex.org/W2028505448","https://openalex.org/W2028803395","https://openalex.org/W2031028006","https://openalex.org/W2034614265","https://openalex.org/W2035175399","https://openalex.org/W2035273639","https://openalex.org/W2037348714","https://openalex.org/W2038163496","https://openalex.org/W2040183627","https://openalex.org/W2046469401","https://openalex.org/W2047253404","https://openalex.org/W2051729520","https://openalex.org/W2055193239","https://openalex.org/W2062018285","https://openalex.org/W2063799325","https://openalex.org/W2065393913","https://openalex.org/W2070397575","https://openalex.org/W2073573051","https://openalex.org/W2075420324","https://openalex.org/W2080959025","https://openalex.org/W2082202339","https://openalex.org/W2083731894","https://openalex.org/W2084772885","https://openalex.org/W2084787613","https://openalex.org/W2085037886","https://openalex.org/W2085289028","https://openalex.org/W2085786299","https://openalex.org/W2088553712","https://openalex.org/W2092883977","https://openalex.org/W2094309012","https://openalex.org/W2094866737","https://openalex.org/W2096536093","https://openalex.org/W2097593311","https://openalex.org/W2098941196","https://openalex.org/W2099686283","https://openalex.org/W2102025585","https://openalex.org/W2106696086","https://openalex.org/W2106747102","https://openalex.org/W2107040871","https://openalex.org/W2108060280","https://openalex.org/W2108192944","https://openalex.org/W2109327803","https://openalex.org/W2113109530","https://openalex.org/W2119191448","https://openalex.org/W2123121534","https://openalex.org/W2127774996","https://openalex.org/W2129881449","https://openalex.org/W2132926880","https://openalex.org/W2133347001","https://openalex.org/W2135573097","https://openalex.org/W2137852592","https://openalex.org/W2138572581","https://openalex.org/W2138782665","https://openalex.org/W2142933669","https://openalex.org/W2143210482","https://openalex.org/W2143658931","https://openalex.org/W2144362290","https://openalex.org/W2144864517","https://openalex.org/W2145819332","https://openalex.org/W2147013899","https://openalex.org/W2148530409","https://openalex.org/W2149769193","https://openalex.org/W2151945801","https://openalex.org/W2155521690","https://openalex.org/W2157163471","https://openalex.org/W2160256138","https://openalex.org/W2160698838","https://openalex.org/W2162891889","https://openalex.org/W2162981291","https://openalex.org/W2164864372","https://openalex.org/W2165284025","https://openalex.org/W2165690367","https://openalex.org/W2167350014","https://openalex.org/W2169424993","https://openalex.org/W2170145644","https://openalex.org/W2274898416","https://openalex.org/W2322262065","https://openalex.org/W2336481247","https://openalex.org/W2417921693","https://openalex.org/W4210450218","https://openalex.org/W6603490751","https://openalex.org/W6700524678","https://openalex.org/W6717127633"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2377079823","https://openalex.org/W2902352756","https://openalex.org/W2605676258","https://openalex.org/W2599962286","https://openalex.org/W2319582300","https://openalex.org/W2890847211"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
