{"id":"https://openalex.org/W2140655420","doi":"https://doi.org/10.1093/bioinformatics/bts056","title":"The Transcriptome Analysis and Comparison Explorer\u2014T-ACE: a platform-independent, graphical tool to process large RNAseq datasets of non-model organisms","display_name":"The Transcriptome Analysis and Comparison Explorer\u2014T-ACE: a platform-independent, graphical tool to process large RNAseq datasets of non-model organisms","publication_year":2012,"publication_date":"2012-01-27","ids":{"openalex":"https://openalex.org/W2140655420","doi":"https://doi.org/10.1093/bioinformatics/bts056","mag":"2140655420","pmid":"https://pubmed.ncbi.nlm.nih.gov/22285826"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts056","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/777/48880658/bioinformatics_28_6_777.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/777/48880658/bioinformatics_28_6_777.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110267092","display_name":"E. Philipp","orcid":null},"institutions":[{"id":"https://openalex.org/I62912653","display_name":"Cawthron Institute","ror":"https://ror.org/03sffqe64","country_code":"NZ","type":"nonprofit","lineage":["https://openalex.org/I62912653"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"E. E. R. Philipp","raw_affiliation_strings":["1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand"],"affiliations":[{"raw_affiliation_string":"1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand","institution_ids":["https://openalex.org/I62912653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084409898","display_name":"Lars Kraemer","orcid":"https://orcid.org/0000-0002-0586-8357"},"institutions":[{"id":"https://openalex.org/I62912653","display_name":"Cawthron Institute","ror":"https://ror.org/03sffqe64","country_code":"NZ","type":"nonprofit","lineage":["https://openalex.org/I62912653"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"L. Kraemer","raw_affiliation_strings":["1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand"],"affiliations":[{"raw_affiliation_string":"1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand","institution_ids":["https://openalex.org/I62912653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033517410","display_name":"D. Mountfort","orcid":null},"institutions":[{"id":"https://openalex.org/I62912653","display_name":"Cawthron Institute","ror":"https://ror.org/03sffqe64","country_code":"NZ","type":"nonprofit","lineage":["https://openalex.org/I62912653"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"D. Mountfort","raw_affiliation_strings":["1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand"],"affiliations":[{"raw_affiliation_string":"1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand","institution_ids":["https://openalex.org/I62912653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003270775","display_name":"Markus B. Schilhabel","orcid":null},"institutions":[{"id":"https://openalex.org/I62912653","display_name":"Cawthron Institute","ror":"https://ror.org/03sffqe64","country_code":"NZ","type":"nonprofit","lineage":["https://openalex.org/I62912653"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"M. Schilhabel","raw_affiliation_strings":["1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand"],"affiliations":[{"raw_affiliation_string":"1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand","institution_ids":["https://openalex.org/I62912653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059435501","display_name":"Stefan Schreiber","orcid":"https://orcid.org/0000-0003-2254-7771"},"institutions":[{"id":"https://openalex.org/I62912653","display_name":"Cawthron Institute","ror":"https://ror.org/03sffqe64","country_code":"NZ","type":"nonprofit","lineage":["https://openalex.org/I62912653"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"S. Schreiber","raw_affiliation_strings":["1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand"],"affiliations":[{"raw_affiliation_string":"1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand","institution_ids":["https://openalex.org/I62912653"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054564152","display_name":"Philip Rosenstiel","orcid":"https://orcid.org/0000-0002-9692-8828"},"institutions":[{"id":"https://openalex.org/I62912653","display_name":"Cawthron Institute","ror":"https://ror.org/03sffqe64","country_code":"NZ","type":"nonprofit","lineage":["https://openalex.org/I62912653"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"P. Rosenstiel","raw_affiliation_strings":["1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand"],"affiliations":[{"raw_affiliation_string":"1 Department of Cell biology, Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Schittenhelmstrasse 12, 24105 Kiel, Germany and 2Cawthron Institute, 98 Halifax Street East Nelson 7010, Private Bag 2, Nelson 7042, New Zealand","institution_ids":["https://openalex.org/I62912653"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5110267092"],"corresponding_institution_ids":["https://openalex.org/I62912653"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.2102,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.78512736,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"28","issue":"6","first_page":"777","last_page":"783"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.772986888885498},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7368063926696777},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.704382598400116},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5662714838981628},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5222081542015076},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4977732002735138},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.49152836203575134},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47557440400123596},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4136124849319458},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38775914907455444},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35252845287323},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35057032108306885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2319411337375641},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17118093371391296},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12683218717575073},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11545655131340027},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10180017352104187}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.772986888885498},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7368063926696777},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.704382598400116},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5662714838981628},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5222081542015076},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4977732002735138},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.49152836203575134},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47557440400123596},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4136124849319458},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38775914907455444},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35252845287323},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35057032108306885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2319411337375641},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17118093371391296},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12683218717575073},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11545655131340027},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10180017352104187},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008974","descriptor_name":"Mollusca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008974","descriptor_name":"Mollusca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008974","descriptor_name":"Mollusca","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011077","descriptor_name":"Polychaeta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011077","descriptor_name":"Polychaeta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011077","descriptor_name":"Polychaeta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts056","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/777/48880658/bioinformatics_28_6_777.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22285826","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22285826","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts056","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/777/48880658/bioinformatics_28_6_777.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4300000071525574},{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G4817847958","display_name":null,"funder_award_id":"Future","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320326641","display_name":"Exzellenzclusters Entz\u00fcndungsforschung","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140655420.pdf","grobid_xml":"https://content.openalex.org/works/W2140655420.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1499500424","https://openalex.org/W1970582053","https://openalex.org/W1971899779","https://openalex.org/W1988123382","https://openalex.org/W1989348205","https://openalex.org/W2053927782","https://openalex.org/W2100703845","https://openalex.org/W2103017472","https://openalex.org/W2116423958","https://openalex.org/W2120457919","https://openalex.org/W2139719208","https://openalex.org/W2146389940","https://openalex.org/W2159482845","https://openalex.org/W2160969485","https://openalex.org/W2162666803","https://openalex.org/W2164154943","https://openalex.org/W2166265186","https://openalex.org/W2914037595","https://openalex.org/W2949793923","https://openalex.org/W4294216483","https://openalex.org/W6629874611","https://openalex.org/W6681136588"],"related_works":["https://openalex.org/W1657880117","https://openalex.org/W2595172197","https://openalex.org/W1964572291","https://openalex.org/W2127970246","https://openalex.org/W2084856301","https://openalex.org/W1001352512","https://openalex.org/W4382618745","https://openalex.org/W2885125400","https://openalex.org/W2297026197","https://openalex.org/W3089173564"],"abstract_inverted_index":{"Next":[0],"generation":[1],"sequencing":[2],"(NGS)":[3],"technologies":[4],"allow":[5],"a":[6,35,40,73,98,104,109,113,191,236],"rapid":[7],"and":[8,18,24,45,69,79,85,136,140,154,168,174,197,223,232,250],"cost-effective":[9],"compilation":[10],"of":[11,26,81,91,162,194,228,247],"large":[12,82],"RNA":[13],"sequence":[14,83,100,135],"datasets":[15],"in":[16,42,201,221],"model":[17],"non-model":[19,92],"organisms.":[20],"However,":[21],"the":[22,66,77,133,160,207,225,229,244,248],"storage":[23],"analysis":[25,54,80,157],"transcriptome":[27,53,89,156,251],"information":[28,117,142],"from":[29,210],"different":[30,203,211,245],"NGS":[31],"platforms":[32,214],"is":[33,130],"still":[34],"significant":[36],"bottleneck,":[37],"leading":[38],"to":[39,119,132,243],"delay":[41],"data":[43],"dissemination":[44],"subsequent":[46],"biological":[47],"understanding.":[48],"Especially":[49],"database":[50,111,230],"interfaces":[51],"with":[52,94,218],"modules":[55,158],"going":[56],"beyond":[57],"mere":[58],"read":[59,128],"counts":[60],"are":[61,172],"missing.":[62],"Here,":[63],"we":[64],"present":[65],"Transcriptome":[67],"Analysis":[68],"Comparison":[70],"Explorer":[71],"(T-ACE),":[72],"tool":[74],"designed":[75],"for":[76,88,179,185,198],"organization":[78],"datasets,":[84],"especially":[86],"suited":[87],"projects":[90,200],"organisms":[93],"little":[95],"or":[96,122,127,148,213],"no":[97],"priori":[99],"information.":[101],"T-ACE":[102,151,184],"offers":[103],"TCL-based":[105],"interface,":[106],"which":[107,188,202],"accesses":[108],"PostgreSQL":[110],"via":[112,146],"php-script.":[114],"Within":[115],"T-ACE,":[116],"belonging":[118],"single":[120],"sequences":[121],"contigs,":[123],"such":[124],"as":[125],"annotation":[126],"coverage,":[129],"linked":[131],"respective":[134],"immediately":[137],"accessible.":[138],"Sequences":[139],"assigned":[141],"can":[143,175,239],"be":[144,176,240],"searched":[145],"keyword-":[147],"BLAST-search.":[149],"Additionally,":[150],"provides":[152,235],"within":[153],"between":[155],"on":[159,206],"level":[161],"expression,":[163],"GO":[164],"terms,":[165],"KEGG":[166],"pathways":[167],"protein":[169],"domains.":[170],"Results":[171],"visualized":[173],"easily":[177],"exported":[178],"external":[180],"analysis.":[181],"We":[182],"developed":[183],"laboratory":[186],"environments,":[187],"have":[189],"only":[190],"limited":[192],"amount":[193],"bioinformatics":[195,222],"support,":[196],"collaborative":[199],"partners":[204],"work":[205],"same":[208],"dataset":[209],"locations":[212],"(Windows/Linux/MacOS).":[215],"For":[216],"laboratories":[217],"some":[219],"experience":[220],"programming,":[224],"low":[226],"complexity":[227],"structure":[231],"open-source":[233],"code":[234],"framework":[237],"that":[238],"customized":[241],"according":[242],"needs":[246],"user":[249],"project.":[252]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}