{"id":"https://openalex.org/W2134396951","doi":"https://doi.org/10.1093/bioinformatics/bts050","title":"Toward community standards in the quest for orthologs","display_name":"Toward community standards in the quest for orthologs","publication_year":2012,"publication_date":"2012-02-12","ids":{"openalex":"https://openalex.org/W2134396951","doi":"https://doi.org/10.1093/bioinformatics/bts050","mag":"2134396951","pmid":"https://pubmed.ncbi.nlm.nih.gov/22332236"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/900/48881189/bioinformatics_28_6_900.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"letter","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/900/48881189/bioinformatics_28_6_900.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050068380","display_name":"Christophe Dessimoz","orcid":"https://orcid.org/0000-0002-2170-853X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["CH","ES","GB","SE"],"is_corresponding":true,"raw_author_name":"Christophe Dessimoz","raw_affiliation_strings":["1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I2800139495","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003394700","display_name":"Toni Gabald\u00f3n","orcid":"https://orcid.org/0000-0003-0019-1735"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["CH","ES","GB","SE"],"is_corresponding":false,"raw_author_name":"Toni Gabald\u00f3n","raw_affiliation_strings":["1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I2800139495","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038050740","display_name":"David S. Roos","orcid":"https://orcid.org/0000-0001-6725-4089"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["CH","ES","GB","SE"],"is_corresponding":false,"raw_author_name":"David S. Roos","raw_affiliation_strings":["1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I2800139495","https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032432650","display_name":"Erik L. L. Sonnhammer","orcid":"https://orcid.org/0000-0002-9015-5588"},"institutions":[{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["CH","ES","GB","SE"],"is_corresponding":false,"raw_author_name":"Erik L. L. Sonnhammer","raw_affiliation_strings":["1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I2800139495","https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048365807","display_name":"Javier Herrero","orcid":"https://orcid.org/0000-0001-7313-717X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["CH","ES","GB","SE"],"is_corresponding":false,"raw_author_name":"Javier Herrero","raw_affiliation_strings":["1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"1 ETH Zurich and Swiss Institute of Bioinformatics, Universit\u00e4tstrasse 6, 8092 Z\u00fcrich, Switzerland, 2Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), and UPF. Dr. Aiguader, 88, 08003 Barcelona, Spain, 3Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, Philadelphia, PA 19104, USA, 4Stockholm Bioinformatics Center, Swedish eScience Research Center, Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, SE-17121 Solna, Sweden, 5European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I2800139495","https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5050068380"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I2800139495","https://openalex.org/I4210137962"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.185,"has_fulltext":true,"cited_by_count":90,"citation_normalized_percentile":{"value":0.97426484,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"28","issue":"6","first_page":"900","last_page":"904"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6556248068809509},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.6323907971382141},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5809724926948547},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5015075206756592},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4734496772289276},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4455733597278595},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43637481331825256},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4272375702857971},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4222784638404846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30007433891296387},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.2427670657634735},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22721603512763977},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2052498757839203},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.11531680822372437},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07747432589530945},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0733698308467865},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.06960517168045044}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6556248068809509},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.6323907971382141},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5809724926948547},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5015075206756592},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4734496772289276},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4455733597278595},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43637481331825256},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4272375702857971},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4222784638404846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30007433891296387},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.2427670657634735},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22721603512763977},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2052498757839203},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.11531680822372437},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07747432589530945},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0733698308467865},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.06960517168045044},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":14,"locations":[{"id":"doi:10.1093/bioinformatics/bts050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/900/48881189/bioinformatics_28_6_900.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22332236","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22332236","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:unige.ch:aou:unige:78650","is_oa":false,"landing_page_url":"https://archive-ouverte.unige.ch/unige:78650","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.zora.uzh.ch:155199","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Dessimoz, C; Gabaldon, T; Roos, D S; Sonnhammer, E L L; Herrero, J; Altenhoff, A; Apweiler, R; Ashburner, M; Blake, J; Boeckmann, B; Bridge, A; Bruford, E; Cherry, M; Conte, M; Dannie, D; Datta, R; Dessimoz, C; Domelevo Entfellner, J-B; Ebersberger, I; Gabaldon, T; Galperin, M; Herrero, J; Joseph, J; Koestler, T; Kriventseva, E; Lecompte, O; Leunissen, J; Lewis, S; Linard, B; Livstone, M S; et al  (2012). Toward community standards in the quest for orthologs.  Bioinformatics, 28(6):900-904.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:HAL:hal-01636872v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01636872","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2012, 28 (6), pp.900-904. &#x27E8;10.1093/bioinformatics/bts050&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:archive.ugent.be:2094403","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/2094403","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:cgspace.cgiar.org:10568/35840","is_oa":true,"landing_page_url":"https://hdl.handle.net/10568/35840","pdf_url":null,"source":{"id":"https://openalex.org/S4306402055","display_name":"CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1286583668","host_organization_name":"CGIAR","host_organization_lineage":["https://openalex.org/I1286583668"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1395187","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1395187/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BIOINFORMATICS , 28  (6)   pp. 900-904.   (2012)      ","raw_type":"Article"},{"id":"pmh:oai:mouseion.jax.org:stfb2012-1078","is_oa":false,"landing_page_url":"https://mouseion.jax.org/stfb2012/85","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2012","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3307119","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3307119","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/47524","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/47524","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 28 (6)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:ru:oai:repository.ubn.ru.nl:2066/110013","is_oa":false,"landing_page_url":"http://hdl.handle.net/2066/110013","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 28, 900 - 4","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000047524","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000047524","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5167/uzh-155199","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-155199","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/900/48881189/bioinformatics_28_6_900.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320301","display_name":"European Science Foundation","ror":"https://ror.org/04esata81"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134396951.pdf","grobid_xml":"https://content.openalex.org/works/W2134396951.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1977027195","https://openalex.org/W1977597317","https://openalex.org/W1986367828","https://openalex.org/W1990453950","https://openalex.org/W2009234149","https://openalex.org/W2024467994","https://openalex.org/W2027745562","https://openalex.org/W2029503266","https://openalex.org/W2030317329","https://openalex.org/W2035451467","https://openalex.org/W2036696353","https://openalex.org/W2052315005","https://openalex.org/W2053096433","https://openalex.org/W2056568233","https://openalex.org/W2064795263","https://openalex.org/W2069707569","https://openalex.org/W2074007968","https://openalex.org/W2075151670","https://openalex.org/W2075171145","https://openalex.org/W2094019030","https://openalex.org/W2099321785","https://openalex.org/W2103666891","https://openalex.org/W2107038434","https://openalex.org/W2107251251","https://openalex.org/W2116153836","https://openalex.org/W2130682154","https://openalex.org/W2135125252","https://openalex.org/W2143335572","https://openalex.org/W2145100181","https://openalex.org/W2146709375","https://openalex.org/W2151404319","https://openalex.org/W2151859071","https://openalex.org/W2157876964","https://openalex.org/W2159266221","https://openalex.org/W2159500193","https://openalex.org/W2167645766","https://openalex.org/W2168048337","https://openalex.org/W2168696662","https://openalex.org/W2169795311","https://openalex.org/W2170252811","https://openalex.org/W2171815113","https://openalex.org/W2172161197","https://openalex.org/W2182404474","https://openalex.org/W2276605232","https://openalex.org/W4210450218","https://openalex.org/W6644731022"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2506292322","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W4283209547","https://openalex.org/W2625833328","https://openalex.org/W1533177136"],"abstract_inverted_index":{"The":[0,58,95],"identification":[1],"of":[2,20,28,40,49,80,86],"orthologs-genes":[3],"pairs":[4],"descended":[5],"from":[6,25,67,107],"a":[7],"common":[8],"ancestor":[9],"through":[10],"speciation,":[11],"rather":[12],"than":[13],"duplication-has":[14],"emerged":[15],"as":[16],"an":[17,101],"essential":[18],"component":[19],"many":[21],"bioinformatics":[22],"applications,":[23],"ranging":[24],"the":[26,36,47,90],"annotation":[27],"new":[29],"genomes":[30],"to":[31,70,89],"experimental":[32],"target":[33],"prioritization.":[34],"Yet,":[35],"development":[37],"and":[38,56,78,114],"application":[39],"orthology":[41,112],"inference":[42],"methods":[43],"is":[44,100],"hampered":[45],"by":[46],"lack":[48],"consensus":[50],"on":[51,76,84],"source":[52],"proteomes,":[53],"file":[54],"formats":[55],"benchmarks.":[57],"second":[59],"'Quest":[60],"for":[61,97],"Orthologs'":[62],"meeting":[63],"brought":[64],"together":[65],"stakeholders":[66],"various":[68],"communities":[69],"address":[71],"these":[72],"challenges.":[73],"We":[74],"report":[75],"achievements":[77],"outcomes":[79],"this":[81],"meeting,":[82],"focusing":[83],"topics":[85],"particular":[87],"relevance":[88],"research":[91,113],"community":[92,103],"at":[93],"large.":[94],"Quest":[96],"Orthologs":[98],"consortium":[99],"open":[102],"that":[104],"welcomes":[105],"contributions":[106],"all":[108],"researchers":[109],"interested":[110],"in":[111],"applications.":[115]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":18},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
