{"id":"https://openalex.org/W2104994386","doi":"https://doi.org/10.1093/bioinformatics/bts040","title":"SynaptomeDB: an ontology-based knowledgebase for synaptic genes","display_name":"SynaptomeDB: an ontology-based knowledgebase for synaptic genes","publication_year":2012,"publication_date":"2012-01-27","ids":{"openalex":"https://openalex.org/W2104994386","doi":"https://doi.org/10.1093/bioinformatics/bts040","mag":"2104994386","pmid":"https://pubmed.ncbi.nlm.nih.gov/22285564"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts040","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/897/16912840/bts040.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/897/16912840/bts040.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035578057","display_name":"Mehdi Pirooznia","orcid":"https://orcid.org/0000-0002-4210-6458"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mehdi Pirooznia","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453458","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-0437-0557"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tao Wang","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032828460","display_name":"Dimitrios Avramopoulos","orcid":"https://orcid.org/0000-0003-1492-9104"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dimitrios Avramopoulos","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035657425","display_name":"David Valle","orcid":"https://orcid.org/0000-0002-6560-4281"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Valle","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111996645","display_name":"Gareth Thomas","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gareth Thomas","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065713713","display_name":"Richard L. Huganir","orcid":"https://orcid.org/0000-0001-9783-5183"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard L. Huganir","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051850972","display_name":"Fernando S. Goes","orcid":"https://orcid.org/0000-0001-6262-8264"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fernando S. Goes","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068068147","display_name":"James B. Potash","orcid":"https://orcid.org/0000-0002-5802-8079"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James B. Potash","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065109317","display_name":"Peter P. Zandi","orcid":"https://orcid.org/0000-0001-8423-2623"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter P. Zandi","raw_affiliation_strings":["1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, 2McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, 3Solomon H. Snyder Department of Neuroscience, Johns Hopkins School of Medicine, Baltimore, 4Department of Psychiatry, Carver College of Medicine, University of Iowa School of Medicine, Iowa City, IA and 5Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I126307644"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5035578057"],"corresponding_institution_ids":["https://openalex.org/I126307644","https://openalex.org/I145311948"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2815,"has_fulltext":true,"cited_by_count":136,"citation_normalized_percentile":{"value":0.88406286,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"28","issue":"6","first_page":"897","last_page":"899"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9549000263214111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synapse","display_name":"Synapse","score":0.6851832270622253},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5768059492111206},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5011656284332275},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48593273758888245},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.450091689825058},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41114991903305054},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.3140718936920166},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1949477195739746}],"concepts":[{"id":"https://openalex.org/C127445978","wikidata":"https://www.wikidata.org/wiki/Q187181","display_name":"Synapse","level":2,"score":0.6851832270622253},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5768059492111206},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5011656284332275},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48593273758888245},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.450091689825058},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41114991903305054},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3140718936920166},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1949477195739746}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bts040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts040","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/897/16912840/bts040.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22285564","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22285564","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2594593","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3307115","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts040","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/6/897/16912840/bts040.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310145","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95"},{"id":"https://openalex.org/F4320311557","display_name":"Brain Science Institute, Johns Hopkins University","ror":"https://ror.org/00za53h95"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104994386.pdf","grobid_xml":"https://content.openalex.org/works/W2104994386.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1684354303","https://openalex.org/W1751728186","https://openalex.org/W1980294445","https://openalex.org/W1991186969","https://openalex.org/W2010457001","https://openalex.org/W2012129116","https://openalex.org/W2017079501","https://openalex.org/W2073544062","https://openalex.org/W2077992380","https://openalex.org/W2095294411","https://openalex.org/W2103017472","https://openalex.org/W2106391842","https://openalex.org/W2110065044","https://openalex.org/W2122863289","https://openalex.org/W2123329045","https://openalex.org/W2127442418","https://openalex.org/W2130479394","https://openalex.org/W2130842427","https://openalex.org/W2145266975","https://openalex.org/W2149375666","https://openalex.org/W2150934173","https://openalex.org/W2169150541","https://openalex.org/W2170522882","https://openalex.org/W4210450218"],"related_works":["https://openalex.org/W2468279273","https://openalex.org/W2354198838","https://openalex.org/W1989130879","https://openalex.org/W2103419012","https://openalex.org/W2988126442","https://openalex.org/W1974414866","https://openalex.org/W3045696640","https://openalex.org/W2063982682","https://openalex.org/W2113565103","https://openalex.org/W2136950754"],"abstract_inverted_index":{"We":[0],"present":[1],"an":[2],"integrated":[3],"database,":[4],"called":[5],"SynaptomeDB,":[6],"to":[7],"retrieve":[8],"and":[9,24,36,43],"annotate":[10],"genes":[11,16,42],"comprising":[12],"the":[13,20],"synaptome.":[14],"These":[15],"encode":[17],"components":[18],"of":[19],"synapse":[21],"including":[22],"neurotransmitters":[23],"their":[25],"receptors,":[26],"adhesion/cytoskeletal":[27],"proteins,":[28,30],"scaffold":[29],"membrane":[31],"transporters.":[32],"SynaptomeDB":[33],"integrates":[34],"various":[35],"complex":[37],"data":[38],"sources":[39],"for":[40],"synaptic":[41],"proteins.":[44]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
