{"id":"https://openalex.org/W2095745100","doi":"https://doi.org/10.1093/bioinformatics/bts027","title":"Application of canonical correlation analysis for identifying viral integration preferences","display_name":"Application of canonical correlation analysis for identifying viral integration preferences","publication_year":2012,"publication_date":"2012-01-12","ids":{"openalex":"https://openalex.org/W2095745100","doi":"https://doi.org/10.1093/bioinformatics/bts027","mag":"2095745100","pmid":"https://pubmed.ncbi.nlm.nih.gov/22247281"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts027","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/651/688718/bts027.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/651/688718/bts027.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027379422","display_name":"Erg\u00fcn G\u00fcm\u00fc\u015f","orcid":"https://orcid.org/0000-0002-1327-6845"},"institutions":[{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Ergun Gumus","raw_affiliation_strings":["1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey","institution_ids":["https://openalex.org/I67581229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075935061","display_name":"Olcay Kur\u015fun","orcid":"https://orcid.org/0000-0001-7153-2061"},"institutions":[{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Olcay Kursun","raw_affiliation_strings":["1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey","institution_ids":["https://openalex.org/I67581229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065102655","display_name":"Ahmet Sertba\u015f","orcid":"https://orcid.org/0000-0001-8166-1211"},"institutions":[{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ahmet Sertbas","raw_affiliation_strings":["1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey","institution_ids":["https://openalex.org/I67581229"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017360009","display_name":"Duran \u00dcstek","orcid":"https://orcid.org/0000-0002-0060-2859"},"institutions":[{"id":"https://openalex.org/I67581229","display_name":"Istanbul University","ror":"https://ror.org/03a5qrr21","country_code":"TR","type":"education","lineage":["https://openalex.org/I67581229"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Duran Ustek","raw_affiliation_strings":["1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Istanbul University, Istanbul 34320 Turkey and 2Department of Genetics, Institute for Experimental Medicine, Istanbul University, Istanbul 34093 Turkey","institution_ids":["https://openalex.org/I67581229"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5027379422"],"corresponding_institution_ids":["https://openalex.org/I67581229"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.422,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.96521583,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"28","issue":"5","first_page":"651","last_page":"655"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.8748999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11901","display_name":"Bayesian Methods and Mixture Models","score":0.8748999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.8370000123977661,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10057","display_name":"Face and Expression Recognition","score":0.7631999850273132,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/canonical-correlation","display_name":"Canonical correlation","score":0.9082359075546265},{"id":"https://openalex.org/keywords/canonical-analysis","display_name":"Canonical analysis","score":0.6516621112823486},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.5750329494476318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5044490098953247},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3923645615577698},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.33306965231895447},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25686001777648926},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22805088758468628},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2052258849143982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20243212580680847}],"concepts":[{"id":"https://openalex.org/C153874254","wikidata":"https://www.wikidata.org/wiki/Q115542","display_name":"Canonical correlation","level":2,"score":0.9082359075546265},{"id":"https://openalex.org/C75806538","wikidata":"https://www.wikidata.org/wiki/Q5033360","display_name":"Canonical analysis","level":2,"score":0.6516621112823486},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.5750329494476318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5044490098953247},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3923645615577698},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.33306965231895447},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25686001777648926},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22805088758468628},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2052258849143982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20243212580680847},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts027","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/651/688718/bts027.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22247281","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22247281","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts027","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/651/688718/bts027.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.44999998807907104}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095745100.pdf","grobid_xml":"https://content.openalex.org/works/W2095745100.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1488166531","https://openalex.org/W1601553748","https://openalex.org/W1607040979","https://openalex.org/W1821811819","https://openalex.org/W1967827763","https://openalex.org/W1973714307","https://openalex.org/W1998300401","https://openalex.org/W2003967338","https://openalex.org/W2006765654","https://openalex.org/W2016076533","https://openalex.org/W2026422480","https://openalex.org/W2055666215","https://openalex.org/W2076495671","https://openalex.org/W2081447201","https://openalex.org/W2098762621","https://openalex.org/W2100235303","https://openalex.org/W2138717237","https://openalex.org/W2152800101","https://openalex.org/W2160546297","https://openalex.org/W2492307518","https://openalex.org/W2561675875","https://openalex.org/W2905068988","https://openalex.org/W4249920046","https://openalex.org/W6636429404"],"related_works":["https://openalex.org/W2121524531","https://openalex.org/W1565185441","https://openalex.org/W302711736","https://openalex.org/W2174400750","https://openalex.org/W1968846550","https://openalex.org/W1991315556","https://openalex.org/W2367413540","https://openalex.org/W1970646221","https://openalex.org/W2389459357","https://openalex.org/W2354853260"],"abstract_inverted_index":{"Developed":[0],"software":[1],"tool":[2],"is":[3],"available":[4],"at":[5],"http://ce.istanbul.edu.tr/bioinformatics/hiv1/.":[6]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
