{"id":"https://openalex.org/W2130962128","doi":"https://doi.org/10.1093/bioinformatics/bts002","title":"<i>De novo</i> motif discovery facilitates identification of interactions between transcription factors in <i>Saccharomyces cerevisiae</i>","display_name":"<i>De novo</i> motif discovery facilitates identification of interactions between transcription factors in <i>Saccharomyces cerevisiae</i>","publication_year":2012,"publication_date":"2012-01-11","ids":{"openalex":"https://openalex.org/W2130962128","doi":"https://doi.org/10.1093/bioinformatics/bts002","mag":"2130962128","pmid":"https://pubmed.ncbi.nlm.nih.gov/22238267"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts002","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/701/48874459/bioinformatics_28_5_701.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/701/48874459/bioinformatics_28_5_701.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067177217","display_name":"Mei-Ju May Chen","orcid":"https://orcid.org/0000-0002-8721-0304"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Mei-Ju May Chen","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064040228","display_name":"Lih-Ching Chou","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Lih-Ching Chou","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004192007","display_name":"Tsung-Ting Hsieh","orcid":"https://orcid.org/0000-0002-5082-4572"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tsung-Ting Hsieh","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091275016","display_name":"Ding\u2010Dar Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ding-Dar Lee","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017622841","display_name":"Kaiwei Liu","orcid":"https://orcid.org/0000-0002-3394-1478"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kai-Wei Liu","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072618614","display_name":"Chi-Yuan Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chi-Yuan Yu","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025555646","display_name":"Yen\u2010Jen Oyang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yen-Jen Oyang","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000235008","display_name":"Huai\u2010Kuang Tsai","orcid":"https://orcid.org/0000-0002-4200-8137"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Huai-Kuang Tsai","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100710720","display_name":"Chien\u2010Yu Chen","orcid":"https://orcid.org/0000-0002-6940-6389"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Yu Chen","raw_affiliation_strings":["1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"1 Genome and Systems Biology Degree Program, 2Department of Computer Science and Information Engineering, 3Department of Bio-Industrial Mechatronics Engineering, 4Graduate Institute of Biomedical Electronics and Bioinformatics, 5Center for Systems Biology, National Taiwan University and 6Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5067177217"],"corresponding_institution_ids":["https://openalex.org/I16733864","https://openalex.org/I4210098366"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5253,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.65642534,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"28","issue":"5","first_page":"701","last_page":"708"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cooperativity","display_name":"Cooperativity","score":0.7108908295631409},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6421579122543335},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.5586705207824707},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5476795434951782},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.5349121689796448},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5028972029685974},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3969636559486389},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3905702829360962},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35580551624298096},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30703550577163696}],"concepts":[{"id":"https://openalex.org/C166014724","wikidata":"https://www.wikidata.org/wiki/Q337217","display_name":"Cooperativity","level":2,"score":0.7108908295631409},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6421579122543335},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.5586705207824707},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5476795434951782},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.5349121689796448},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5028972029685974},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3969636559486389},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3905702829360962},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35580551624298096},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30703550577163696},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bts002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts002","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/701/48874459/bioinformatics_28_5_701.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22238267","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22238267","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts002","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/701/48874459/bioinformatics_28_5_701.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130962128.pdf","grobid_xml":"https://content.openalex.org/works/W2130962128.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1566700084","https://openalex.org/W1644724366","https://openalex.org/W1820943743","https://openalex.org/W1967395341","https://openalex.org/W1969228261","https://openalex.org/W1970249028","https://openalex.org/W1973260612","https://openalex.org/W1975036436","https://openalex.org/W1981093360","https://openalex.org/W1994122295","https://openalex.org/W2019012779","https://openalex.org/W2025146617","https://openalex.org/W2025778665","https://openalex.org/W2080498142","https://openalex.org/W2083052219","https://openalex.org/W2098222328","https://openalex.org/W2099727278","https://openalex.org/W2103453943","https://openalex.org/W2105315497","https://openalex.org/W2107449223","https://openalex.org/W2108887668","https://openalex.org/W2110037042","https://openalex.org/W2112090702","https://openalex.org/W2113117122","https://openalex.org/W2118304741","https://openalex.org/W2118628540","https://openalex.org/W2125508747","https://openalex.org/W2126602684","https://openalex.org/W2130410032","https://openalex.org/W2133036743","https://openalex.org/W2135243774","https://openalex.org/W2144280382","https://openalex.org/W2146513423","https://openalex.org/W2154022964","https://openalex.org/W2162415896","https://openalex.org/W2166103265","https://openalex.org/W2582743722","https://openalex.org/W4248318091","https://openalex.org/W6633970848"],"related_works":["https://openalex.org/W2002128513","https://openalex.org/W2092874662","https://openalex.org/W2171277769","https://openalex.org/W1991523530","https://openalex.org/W2020824267","https://openalex.org/W2114217399","https://openalex.org/W2318511135","https://openalex.org/W1992956789","https://openalex.org/W2145627818","https://openalex.org/W1977407898"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}