{"id":"https://openalex.org/W2121150886","doi":"https://doi.org/10.1093/bioinformatics/bts001","title":"SNP calling using genotype model selection on high-throughput sequencing data","display_name":"SNP calling using genotype model selection on high-throughput sequencing data","publication_year":2012,"publication_date":"2012-01-16","ids":{"openalex":"https://openalex.org/W2121150886","doi":"https://doi.org/10.1093/bioinformatics/bts001","mag":"2121150886","pmid":"https://pubmed.ncbi.nlm.nih.gov/22253293"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bts001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts001","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/643/16910643/bts001.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/643/16910643/bts001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103136437","display_name":"Na You","orcid":"https://orcid.org/0000-0001-8014-7229"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Na You","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076808068","display_name":"Gabriel Murillo","orcid":null},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Gabriel Murillo","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042843762","display_name":"Xiaoquan Su","orcid":"https://orcid.org/0000-0003-2144-1991"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Xiaoquan Su","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102779095","display_name":"Xiaowei Zeng","orcid":"https://orcid.org/0000-0002-6567-5506"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Xiaowei Zeng","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081633974","display_name":"Jian Xu","orcid":"https://orcid.org/0000-0002-0548-8477"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Jian Xu","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076346443","display_name":"Kang Ning","orcid":"https://orcid.org/0000-0003-3325-5387"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Kang Ning","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073292113","display_name":"Shoudong Zhang","orcid":"https://orcid.org/0000-0001-7332-7627"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Shoudong Zhang","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049293054","display_name":"Jian\u2010Kang Zhu","orcid":"https://orcid.org/0000-0001-5134-731X"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Jiankang Zhu","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065998053","display_name":"Xinping Cui","orcid":"https://orcid.org/0000-0002-1420-2696"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":true,"raw_author_name":"Xinping Cui","raw_affiliation_strings":["1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Statistical Science, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China, 2Department of Statistics, University of California, Riverside, CA 92521, USA, 3Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China, 4Plant Stress Genomic and Technology Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia, 5Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907,USA and 6Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521, USA","institution_ids":["https://openalex.org/I71920554","https://openalex.org/I103635307"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5065998053"],"corresponding_institution_ids":["https://openalex.org/I103635307","https://openalex.org/I71920554"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.0085,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.9167424,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"5","first_page":"643","last_page":"650"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.438400000333786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.438400000333786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.12290000170469284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.05950000137090683,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.7270668745040894},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.704188346862793},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6691129803657532},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.6600309610366821},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5350649952888489},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4625083804130554},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41147342324256897},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4020133316516876},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3683706521987915},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.3562467694282532},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3300134539604187},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22649863362312317},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11263430118560791},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08323097229003906}],"concepts":[{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.7270668745040894},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.704188346862793},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6691129803657532},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.6600309610366821},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5350649952888489},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4625083804130554},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41147342324256897},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4020133316516876},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3683706521987915},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.3562467694282532},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3300134539604187},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22649863362312317},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11263430118560791},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08323097229003906},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046968","descriptor_name":"Thermoanaerobacter","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046968","descriptor_name":"Thermoanaerobacter","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046968","descriptor_name":"Thermoanaerobacter","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/bts001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts001","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/643/16910643/bts001.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22253293","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22253293","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2583199","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3338331","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:ir.qibebt.ac.cn:337004/1419","is_oa":false,"landing_page_url":"http://124.16.151.184:8080/handle/337004/1419","pdf_url":null,"source":{"id":"https://openalex.org/S4306400842","display_name":"Institutional knowledge base (Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I19820366","host_organization_name":"Chinese Academy of Sciences","host_organization_lineage":["https://openalex.org/I19820366"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\u671f\u520a\u8bba\u6587"},{"id":"pmh:oai:pubmedcentral.nih.gov:3338331","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3338331","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/562059","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/562059","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bts001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bts001","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/5/643/16910643/bts001.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G130909266","display_name":null,"funder_award_id":"30870572","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1708109575","display_name":null,"funder_award_id":"R01 GM070795","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5657290011","display_name":null,"funder_award_id":"R01GM070795","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7729692947","display_name":null,"funder_award_id":"R01GM070795","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121150886.pdf","grobid_xml":"https://content.openalex.org/works/W2121150886.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1528782506","https://openalex.org/W1596515083","https://openalex.org/W1605204992","https://openalex.org/W1824047490","https://openalex.org/W1987940356","https://openalex.org/W1988185025","https://openalex.org/W2002344122","https://openalex.org/W2004834404","https://openalex.org/W2015022780","https://openalex.org/W2020154367","https://openalex.org/W2066116650","https://openalex.org/W2085060961","https://openalex.org/W2091841926","https://openalex.org/W2095848015","https://openalex.org/W2097341408","https://openalex.org/W2097821349","https://openalex.org/W2103441770","https://openalex.org/W2105035271","https://openalex.org/W2107318366","https://openalex.org/W2108234281","https://openalex.org/W2110065044","https://openalex.org/W2111584304","https://openalex.org/W2112113834","https://openalex.org/W2115244190","https://openalex.org/W2118526609","https://openalex.org/W2119180969","https://openalex.org/W2119413407","https://openalex.org/W2122732537","https://openalex.org/W2124960286","https://openalex.org/W2124985265","https://openalex.org/W2125905177","https://openalex.org/W2127515057","https://openalex.org/W2145636602","https://openalex.org/W2151732271","https://openalex.org/W2155943701","https://openalex.org/W2156434996","https://openalex.org/W2161724277","https://openalex.org/W2161815151","https://openalex.org/W2164507782","https://openalex.org/W2168133698","https://openalex.org/W2497101904","https://openalex.org/W4247053599","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2164855536","https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W2070581548","https://openalex.org/W4281711902","https://openalex.org/W3206555169","https://openalex.org/W3016573916","https://openalex.org/W3157359833","https://openalex.org/W3024317680","https://openalex.org/W1511048503"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1,56],"review":[2],"of":[3,31,59,80,97],"the":[4,73,78,81,93,104],"available":[5,124],"single":[6],"nucleotide":[7],"polymorphism":[8],"(SNP)":[9],"calling":[10,34],"procedures":[11],"for":[12,72],"Illumina":[13],"high-throughput":[14],"sequencing":[15],"(HTS)":[16],"platform":[17],"data":[18,87,122],"reveals":[19],"that":[20,75,90],"most":[21],"rely":[22],"mainly":[23],"on":[24],"base-calling":[25,41],"and":[26,61,85,99],"mapping":[27],"qualities":[28],"as":[29,45],"sources":[30],"error":[32],"when":[33],"SNPs.":[35],"Thus,":[36],"errors":[37,74],"not":[38,52],"involved":[39],"in":[40,47],"or":[42,117],"alignment,":[43],"such":[44],"those":[46],"genomic":[48,82],"sample":[49],"preparation,":[50],"are":[51,123],"accounted":[53],"for.":[54],"RESULTS:":[55],"novel":[57],"method":[58],"consensus":[60],"SNP":[62,106],"calling,":[63],"Genotype":[64],"Model":[65],"Selection":[66],"(GeMS),":[67],"is":[68],"given":[69],"which":[70],"accounts":[71],"occur":[76],"during":[77],"preparation":[79],"sample.":[83],"Simulations":[84],"real":[86],"analyses":[88],"indicate":[89],"GeMS":[91,110],"has":[92],"best":[94],"performance":[95],"balance":[96],"sensitivity":[98],"positive":[100],"predictive":[101],"value":[102],"among":[103],"tested":[105],"callers.":[107],"AVAILABILITY:":[108],"The":[109],"package":[111],"can":[112],"be":[113],"downloaded":[114],"from":[115],"https://sites.google.com/a/bioinformatics.ucr.edu/xinping-cui/home/software":[116],"http://computationalbioenergy.org/software.html.":[118],"SUPPLEMENTARY":[119],"INFORMATION:":[120],"Supplementary":[121],"at":[125],"Bioinformatics":[126],"online.":[127]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
