{"id":"https://openalex.org/W2144671632","doi":"https://doi.org/10.1093/bioinformatics/btr686","title":"Detection of microRNAs in color space","display_name":"Detection of microRNAs in color space","publication_year":2011,"publication_date":"2011-12-09","ids":{"openalex":"https://openalex.org/W2144671632","doi":"https://doi.org/10.1093/bioinformatics/btr686","mag":"2144671632","pmid":"https://pubmed.ncbi.nlm.nih.gov/22171334"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr686","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr686","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/318/48873925/bioinformatics_28_3_318.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/318/48873925/bioinformatics_28_3_318.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012557025","display_name":"Antonio De Marco","orcid":"https://orcid.org/0000-0002-8603-7503"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Antonio Marco","raw_affiliation_strings":["Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, M13 9PT Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, M13 9PT Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001502247","display_name":"Sam Griffiths\u2010Jones","orcid":"https://orcid.org/0000-0001-6043-807X"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sam Griffiths-Jones","raw_affiliation_strings":["Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, M13 9PT Manchester, UK","Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, M13 9PT, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, M13 9PT Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, M13 9PT, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5012557025"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5738,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.82822868,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"3","first_page":"318","last_page":"323"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3847000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3847000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.218299999833107,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.04780000075697899,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mirbase","display_name":"MiRBase","score":0.6830717325210571},{"id":"https://openalex.org/keywords/sequence-space","display_name":"Sequence space","score":0.5980125665664673},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5430216193199158},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5016052722930908},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4981105327606201},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.4902365803718567},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4396926164627075},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4331636130809784},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4169237017631531},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32834285497665405},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.2556007206439972},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.11187976598739624},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10805222392082214},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10752201080322266}],"concepts":[{"id":"https://openalex.org/C49305753","wikidata":"https://www.wikidata.org/wiki/Q6826947","display_name":"MiRBase","level":4,"score":0.6830717325210571},{"id":"https://openalex.org/C30711495","wikidata":"https://www.wikidata.org/wiki/Q289411","display_name":"Sequence space","level":3,"score":0.5980125665664673},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5430216193199158},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5016052722930908},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4981105327606201},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.4902365803718567},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4396926164627075},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4331636130809784},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4169237017631531},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32834285497665405},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.2556007206439972},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.11187976598739624},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10805222392082214},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10752201080322266},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C132954091","wikidata":"https://www.wikidata.org/wiki/Q194397","display_name":"Banach space","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001516","descriptor_name":"Bees","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001516","descriptor_name":"Bees","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001516","descriptor_name":"Bees","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014231","descriptor_name":"Tribolium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014231","descriptor_name":"Tribolium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014231","descriptor_name":"Tribolium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btr686","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr686","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/318/48873925/bioinformatics_28_3_318.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22171334","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22171334","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/9ebff6fb-cea0-4dc3-a2f7-dccaf3581f3c","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/9ebff6fb-cea0-4dc3-a2f7-dccaf3581f3c","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Marco, A & Griffiths-Jones, S 2012, 'Detection of microRNAs in color space', Bioinformatics, vol. 28, no. 3, btr686, pp. 318-323. https://doi.org/10.1093/bioinformatics/btr686","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2273120","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3268249","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/9ebff6fb-cea0-4dc3-a2f7-dccaf3581f3c","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/detection-of-micrornas-in-color-space(9ebff6fb-cea0-4dc3-a2f7-dccaf3581f3c).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Marco, A & Griffiths-Jones, S 2012, 'Detection of microRNAs in color space', Bioinformatics, vol. 28, no. 3, btr686, pp. 318-323. https://doi.org/10.1093/bioinformatics/btr686","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr686","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr686","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/318/48873925/bioinformatics_28_3_318.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1587524000","display_name":null,"funder_award_id":"BB/G011346/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7697155472","display_name":"Multiple products from functional RNA gene loci","funder_award_id":"BB/G011346/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144671632.pdf","grobid_xml":"https://content.openalex.org/works/W2144671632.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1543796220","https://openalex.org/W1903351363","https://openalex.org/W1990231660","https://openalex.org/W2004791359","https://openalex.org/W2007843942","https://openalex.org/W2017426710","https://openalex.org/W2037953066","https://openalex.org/W2038455336","https://openalex.org/W2039415806","https://openalex.org/W2046113363","https://openalex.org/W2049291669","https://openalex.org/W2093931624","https://openalex.org/W2103441770","https://openalex.org/W2103903744","https://openalex.org/W2108367064","https://openalex.org/W2111001535","https://openalex.org/W2114012664","https://openalex.org/W2119120450","https://openalex.org/W2124985265","https://openalex.org/W2140154634","https://openalex.org/W2147495091","https://openalex.org/W2149429041","https://openalex.org/W2153527981","https://openalex.org/W2158714788","https://openalex.org/W2169416219"],"related_works":["https://openalex.org/W4300594067","https://openalex.org/W2100050212","https://openalex.org/W1548813692","https://openalex.org/W2285386646","https://openalex.org/W4387059535","https://openalex.org/W3038335985","https://openalex.org/W113975114","https://openalex.org/W2092600334","https://openalex.org/W778889052","https://openalex.org/W2069923356"],"abstract_inverted_index":{"MOTIVATION:":[0],"Deep":[1],"sequencing":[2,22,64,186],"provides":[3],"inexpensive":[4],"opportunities":[5],"to":[6,55,62,73,77,95,120,153,171,200],"characterize":[7,96,189],"the":[8,28,107,113,130,134,139,154,157,202],"transcriptional":[9],"diversity":[10],"of":[11,20,34,85,133,156,160],"known":[12],"genomes.":[13],"The":[14,124],"AB":[15],"SOLiD":[16,93],"technology":[17,94],"generates":[18],"millions":[19],"short":[21,75],"reads":[23,76,109],"in":[24,79,148],"color-space;":[25],"that":[26,137],"is,":[27],"raw":[29],"data":[30,219],"is":[31,45,53,118,210],"a":[32,83,165],"sequence":[33,141],"colors,":[35],"where":[36],"each":[37,43,161],"color":[38,80,149],"represents":[39],"2":[40],"nt":[41],"and":[42,168,188,205],"nucleotide":[44,159],"represented":[46],"by":[47],"two":[48],"consecutive":[49],"colors.":[50],"This":[51],"strategy":[52],"purported":[54],"have":[56,70],"several":[57],"advantages,":[58],"including":[59],"increased":[60],"ability":[61],"distinguish":[63],"errors":[65],"from":[66],"polymorphisms.":[67],"Several":[68],"programs":[69],"been":[71],"developed":[72],"map":[74,172],"genomes":[78],"space.":[81],"However,":[82],"number":[84],"previously":[86],"unexplored":[87],"technical":[88,103],"issues":[89],"arise":[90],"when":[91],"using":[92],"microRNAs.":[97,192],"RESULTS:":[98],"Here":[99],"we":[100,178],"explore":[101],"these":[102],"difficulties.":[104],"First,":[105],"since":[106],"sequenced":[108],"are":[110,220],"longer":[111],"than":[112],"biological":[114],"sequences,":[115],"every":[116],"read":[117,135],"expected":[119],"contain":[121],"linker":[122,140],"fragments.":[123],"color-calling":[125],"error":[126],"rate":[127],"increases":[128],"toward":[129],"3(')":[131],"end":[132],"such":[136],"recognizing":[138],"for":[142],"removal":[143],"becomes":[144],"problematic.":[145],"Second,":[146],"mapping":[147,169,206],"space":[150],"may":[151],"lead":[152],"loss":[155],"first":[158],"read.":[162],"We":[163],"propose":[164],"sequential":[166,203],"trimming":[167,204],"approach":[170],"small":[173,183],"RNAs.":[174],"Using":[175],"our":[176],"strategy,":[177],"reanalyze":[179],"three":[180],"published":[181],"insect":[182],"RNA":[184],"deep":[185],"datasets":[187],"22":[190],"new":[191],"AVAILABILITY":[193],"AND":[194],"IMPLEMENTATION:":[195],"A":[196],"bash":[197],"shell":[198],"script":[199],"perform":[201],"procedure,":[207],"called":[208],"SeqTrimMap,":[209],"available":[211,221],"at:":[212],"http://www.mirbase.org/tools/seqtrimmap/":[213],"CONTACT:":[214],"antonio.marco@manchester.ac.uk":[215],"SUPPLEMENTARY":[216],"INFORMATION:":[217],"Supplementary":[218],"at":[222],"Bioinformatics":[223],"online.":[224]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
