{"id":"https://openalex.org/W2121743948","doi":"https://doi.org/10.1093/bioinformatics/btr670","title":"Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data","display_name":"Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data","publication_year":2011,"publication_date":"2011-12-06","ids":{"openalex":"https://openalex.org/W2121743948","doi":"https://doi.org/10.1093/bioinformatics/btr670","mag":"2121743948","pmid":"https://pubmed.ncbi.nlm.nih.gov/22155870"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr670","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/423/48875864/bioinformatics_28_3_423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/423/48875864/bioinformatics_28_3_423.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074876525","display_name":"Valentina Boeva","orcid":"https://orcid.org/0000-0002-4382-7185"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Valentina Boeva","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101522104","display_name":"Tatiana Popova","orcid":"https://orcid.org/0000-0002-6570-8064"},"institutions":[{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Tatiana Popova","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053413311","display_name":"Kevin Bleakley","orcid":null},"institutions":[{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Kevin Bleakley","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037433802","display_name":"Pierre Chiche","orcid":null},"institutions":[{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Chiche","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020317345","display_name":"Julie Cappo","orcid":null},"institutions":[{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie Cappo","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072347237","display_name":"Gudrun Schleiermacher","orcid":"https://orcid.org/0000-0002-0133-5879"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gudrun Schleiermacher","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058372540","display_name":"Isabelle Janoueix\u2010Lerosey","orcid":"https://orcid.org/0000-0003-0434-3003"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Isabelle Janoueix-Lerosey","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029619328","display_name":"Olivier Delattre","orcid":"https://orcid.org/0000-0002-8730-2276"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Delattre","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062067186","display_name":"Emmanuel Barillot","orcid":"https://orcid.org/0000-0003-2724-2002"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"funder","lineage":["https://openalex.org/I80043"]},{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emmanuel Barillot","raw_affiliation_strings":["1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France"],"affiliations":[{"raw_affiliation_string":"1 Institut Curie, 2INSERM, U900, Bioinformatics and Computational Systems Biology of Cancer, Paris 75248, 3Mines ParisTech, Fontainebleau 77300, 4INSERM, U830, Genetics and Biology of Cancers, Paris 75248 and 5INRIA Saclay, Orsay 91893, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043","https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5074876525"],"corresponding_institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I154526488","https://openalex.org/I70768539","https://openalex.org/I80043"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.2217,"has_fulltext":true,"cited_by_count":1069,"citation_normalized_percentile":{"value":0.96734362,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"28","issue":"3","first_page":"423","last_page":"425"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/loss-of-heterozygosity","display_name":"Loss of heterozygosity","score":0.7383028864860535},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.60755854845047},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5379418134689331},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.5207929015159607},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4705398678779602},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.45590725541114807},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4530678391456604},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.4199220538139343},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2142532765865326},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.14581644535064697},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11952036619186401}],"concepts":[{"id":"https://openalex.org/C143589142","wikidata":"https://www.wikidata.org/wiki/Q2617554","display_name":"Loss of heterozygosity","level":4,"score":0.7383028864860535},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.60755854845047},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5379418134689331},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.5207929015159607},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4705398678779602},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.45590725541114807},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4530678391456604},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.4199220538139343},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2142532765865326},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.14581644535064697},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11952036619186401}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019656","descriptor_name":"Loss of Heterozygosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019656","descriptor_name":"Loss of Heterozygosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019656","descriptor_name":"Loss of Heterozygosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr670","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/423/48875864/bioinformatics_28_3_423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22155870","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22155870","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2273116","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3268243","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr670","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr670","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/423/48875864/bioinformatics_28_3_423.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.699999988079071,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121743948.pdf","grobid_xml":"https://content.openalex.org/works/W2121743948.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1986522151","https://openalex.org/W2097331151","https://openalex.org/W2117692326","https://openalex.org/W2122732537","https://openalex.org/W2144759168","https://openalex.org/W2149247444","https://openalex.org/W2155197934","https://openalex.org/W2163022769","https://openalex.org/W6682785248"],"related_works":["https://openalex.org/W2353484916","https://openalex.org/W2414346359","https://openalex.org/W2404120231","https://openalex.org/W2001734836","https://openalex.org/W2007389278","https://openalex.org/W2414485083","https://openalex.org/W2470127854","https://openalex.org/W2355979292","https://openalex.org/W2365092154","https://openalex.org/W2148802890"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":99},{"year":2024,"cited_by_count":111},{"year":2023,"cited_by_count":106},{"year":2022,"cited_by_count":100},{"year":2021,"cited_by_count":139},{"year":2020,"cited_by_count":107},{"year":2019,"cited_by_count":100},{"year":2018,"cited_by_count":86},{"year":2017,"cited_by_count":60},{"year":2016,"cited_by_count":48},{"year":2015,"cited_by_count":41},{"year":2014,"cited_by_count":32},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":7}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}