{"id":"https://openalex.org/W2167918062","doi":"https://doi.org/10.1093/bioinformatics/btr659","title":"NRPSsp: non-ribosomal peptide synthase substrate predictor","display_name":"NRPSsp: non-ribosomal peptide synthase substrate predictor","publication_year":2011,"publication_date":"2011-11-29","ids":{"openalex":"https://openalex.org/W2167918062","doi":"https://doi.org/10.1093/bioinformatics/btr659","mag":"2167918062","pmid":"https://pubmed.ncbi.nlm.nih.gov/22130593"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr659","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr659","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/426/48878316/bioinformatics_28_3_426.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/426/48878316/bioinformatics_28_3_426.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068214216","display_name":"Carlos Alberto Vanegas Prieto","orcid":"https://orcid.org/0000-0001-8178-9768"},"institutions":[{"id":"https://openalex.org/I4210146045","display_name":"Instituto de Biotecnolog\u00eda de Le\u00f3n","ror":"https://ror.org/03ry8wj79","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210146045"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Carlos Prieto","raw_affiliation_strings":["Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain","institution_ids":["https://openalex.org/I4210146045"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090799373","display_name":"Carlos Garc\u00eda\u2010Estrada","orcid":"https://orcid.org/0000-0001-5617-9669"},"institutions":[{"id":"https://openalex.org/I4210146045","display_name":"Instituto de Biotecnolog\u00eda de Le\u00f3n","ror":"https://ror.org/03ry8wj79","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210146045"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Garc\u00eda-Estrada","raw_affiliation_strings":["Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain","institution_ids":["https://openalex.org/I4210146045"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037161683","display_name":"Diego Lorenzana","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146045","display_name":"Instituto de Biotecnolog\u00eda de Le\u00f3n","ror":"https://ror.org/03ry8wj79","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210146045"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Diego Lorenzana","raw_affiliation_strings":["Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain","institution_ids":["https://openalex.org/I4210146045"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077467718","display_name":"Juan F. Mart\u0131\u0301n","orcid":"https://orcid.org/0000-0003-0156-2059"},"institutions":[{"id":"https://openalex.org/I4210146045","display_name":"Instituto de Biotecnolog\u00eda de Le\u00f3n","ror":"https://ror.org/03ry8wj79","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210146045"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan Francisco Mart\u00edn","raw_affiliation_strings":["Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain"],"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology of Leon, INBIOTEC, Parque Cient\u00edfico de Le\u00f3n, 24006 Le\u00f3n, Spain","institution_ids":["https://openalex.org/I4210146045"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5068214216"],"corresponding_institution_ids":["https://openalex.org/I4210146045"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.4142,"has_fulltext":false,"cited_by_count":114,"citation_normalized_percentile":{"value":0.95728476,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"28","issue":"3","first_page":"426","last_page":"427"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.5661166906356812},{"id":"https://openalex.org/keywords/substrate","display_name":"Substrate (aquarium)","score":0.47520408034324646},{"id":"https://openalex.org/keywords/atp-synthase","display_name":"ATP synthase","score":0.4355090260505676},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.42356395721435547},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.42012137174606323},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.38991397619247437},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37619221210479736},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35456663370132446},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32082027196884155},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.3167833983898163},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08190801739692688},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06754893064498901}],"concepts":[{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.5661166906356812},{"id":"https://openalex.org/C2777289219","wikidata":"https://www.wikidata.org/wiki/Q7632154","display_name":"Substrate (aquarium)","level":2,"score":0.47520408034324646},{"id":"https://openalex.org/C112243037","wikidata":"https://www.wikidata.org/wiki/Q22327117","display_name":"ATP synthase","level":3,"score":0.4355090260505676},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.42356395721435547},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.42012137174606323},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.38991397619247437},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37619221210479736},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35456663370132446},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32082027196884155},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.3167833983898163},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08190801739692688},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06754893064498901}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010453","descriptor_name":"Peptide Synthases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr659","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr659","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/426/48878316/bioinformatics_28_3_426.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22130593","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22130593","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:buleria.unileon.es:10612/24189","is_oa":false,"landing_page_url":"https://doi.org/10.1093/BIOINFORMATICS/BTR659","pdf_url":null,"source":{"id":"https://openalex.org/S4306401642","display_name":"Buleria (Universidad de Le\u00f3n)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169046204","host_organization_name":"Universidad Aut\u00f3noma de Nuevo Le\u00f3n","host_organization_lineage":["https://openalex.org/I169046204"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr659","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr659","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/426/48878316/bioinformatics_28_3_426.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167918062.pdf","grobid_xml":"https://content.openalex.org/works/W2167918062.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1934400729","https://openalex.org/W1964651510","https://openalex.org/W1970386034","https://openalex.org/W1977385550","https://openalex.org/W1980095813","https://openalex.org/W2011700260","https://openalex.org/W2062185057","https://openalex.org/W2080895748","https://openalex.org/W2093324594","https://openalex.org/W2114839447","https://openalex.org/W2131887397","https://openalex.org/W2149597323","https://openalex.org/W2166287003"],"related_works":["https://openalex.org/W1486477748","https://openalex.org/W3160080178","https://openalex.org/W3203602801","https://openalex.org/W2321482861","https://openalex.org/W1981947798","https://openalex.org/W3152396935","https://openalex.org/W1950469858","https://openalex.org/W4385781608","https://openalex.org/W2158900359","https://openalex.org/W2740043336"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"is":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":4}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
