{"id":"https://openalex.org/W2130324757","doi":"https://doi.org/10.1093/bioinformatics/btr652","title":"Using Sybil for interactive comparative genomics of microbes on the web","display_name":"Using Sybil for interactive comparative genomics of microbes on the web","publication_year":2011,"publication_date":"2011-11-24","ids":{"openalex":"https://openalex.org/W2130324757","doi":"https://doi.org/10.1093/bioinformatics/btr652","mag":"2130324757","pmid":"https://pubmed.ncbi.nlm.nih.gov/22121156"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr652","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr652","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/160/16910001/btr652.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/160/16910001/btr652.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001785282","display_name":"David R. Riley","orcid":"https://orcid.org/0000-0002-0905-6524"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David R. Riley","raw_affiliation_strings":["1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010137910","display_name":"Samuel V. Angiuoli","orcid":"https://orcid.org/0000-0001-9525-4350"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel V. Angiuoli","raw_affiliation_strings":["1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036572017","display_name":"Jonathan Crabtree","orcid":"https://orcid.org/0000-0002-7286-5690"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Crabtree","raw_affiliation_strings":["1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024171828","display_name":"Julie C. Dunning Hotopp","orcid":"https://orcid.org/0000-0003-3862-986X"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie C. Dunning Hotopp","raw_affiliation_strings":["1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084925508","display_name":"Herv\u00e9 Tettelin","orcid":"https://orcid.org/0000-0002-0615-3257"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herv\u00e9 Tettelin","raw_affiliation_strings":["1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"1 Institute for Genome Sciences and 2Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5001785282"],"corresponding_institution_ids":["https://openalex.org/I126744593"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.2581,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.88305918,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"2","first_page":"160","last_page":"166"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9740999937057495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.703171968460083},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6420220136642456},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6170581579208374},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.544163703918457},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5401138067245483},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4946891963481903},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4529891312122345},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44659796357154846},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4451175332069397},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.4338643550872803},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4209301173686981},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3962858319282532},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3244377374649048},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2795935273170471},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16819694638252258},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.166568785905838},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0934072732925415},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08971863985061646}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.703171968460083},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6420220136642456},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6170581579208374},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.544163703918457},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5401138067245483},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4946891963481903},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4529891312122345},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44659796357154846},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4451175332069397},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4338643550872803},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4209301173686981},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3962858319282532},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3244377374649048},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2795935273170471},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16819694638252258},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.166568785905838},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0934072732925415},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08971863985061646},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011008","descriptor_name":"Pneumococcal Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011008","descriptor_name":"Pneumococcal Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011008","descriptor_name":"Pneumococcal Infections","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013296","descriptor_name":"Streptococcus pneumoniae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr652","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr652","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/160/16910001/btr652.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22121156","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22121156","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3259440","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3259440","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr652","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr652","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/160/16910001/btr652.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130324757.pdf","grobid_xml":"https://content.openalex.org/works/W2130324757.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W129483469","https://openalex.org/W1904872924","https://openalex.org/W1990095531","https://openalex.org/W1991330646","https://openalex.org/W1997710299","https://openalex.org/W2017321063","https://openalex.org/W2027448315","https://openalex.org/W2038678671","https://openalex.org/W2055043387","https://openalex.org/W2066609648","https://openalex.org/W2112132489","https://openalex.org/W2114592519","https://openalex.org/W2121369371","https://openalex.org/W2121621283","https://openalex.org/W2128016314","https://openalex.org/W2135277010","https://openalex.org/W2145477956","https://openalex.org/W2149109523","https://openalex.org/W2150934173","https://openalex.org/W2151240502","https://openalex.org/W2151397621","https://openalex.org/W2151831732","https://openalex.org/W2152770371","https://openalex.org/W2153091158","https://openalex.org/W2157302781","https://openalex.org/W2158804744","https://openalex.org/W2160397907","https://openalex.org/W2161746138","https://openalex.org/W2162792752","https://openalex.org/W2164786886","https://openalex.org/W3138771162","https://openalex.org/W6792221166"],"related_works":["https://openalex.org/W2414506155","https://openalex.org/W2752117239","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2170130581","https://openalex.org/W2941201441","https://openalex.org/W4318240630","https://openalex.org/W2353729507","https://openalex.org/W2560359598","https://openalex.org/W3023271652"],"abstract_inverted_index":{"The":[0,7],"S.pneumoniae":[1],"resource":[2],"is":[3],"online":[4],"at":[5],"http://strepneumo-sybil.igs.umaryland.edu.":[6],"software,":[8],"database":[9],"and":[10,21],"website":[11],"are":[12],"available":[13],"for":[14],"download":[15],"as":[16],"a":[17],"portable":[18],"virtual":[19],"machine":[20],"from":[22],"http://sourceforge.net/projects/sybil.":[23]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
