{"id":"https://openalex.org/W2106238914","doi":"https://doi.org/10.1093/bioinformatics/btr639","title":"Integrating human and murine anatomical gene expression data for improved comparisons","display_name":"Integrating human and murine anatomical gene expression data for improved comparisons","publication_year":2011,"publication_date":"2011-11-20","ids":{"openalex":"https://openalex.org/W2106238914","doi":"https://doi.org/10.1093/bioinformatics/btr639","mag":"2106238914","pmid":"https://pubmed.ncbi.nlm.nih.gov/22106336"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr639","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr639","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/397/48874345/bioinformatics_28_3_397.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/397/48874345/bioinformatics_28_3_397.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081108161","display_name":"Natalia Jim\u00e9nez-Lozano","orcid":null},"institutions":[{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Natalia Jim\u00e9nez-Lozano","raw_affiliation_strings":["1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK"],"affiliations":[{"raw_affiliation_string":"1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007270631","display_name":"Joan Segura","orcid":"https://orcid.org/0000-0001-5593-735X"},"institutions":[{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joan Segura","raw_affiliation_strings":["1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK"],"affiliations":[{"raw_affiliation_string":"1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035948189","display_name":"Jos\u00e9 Ram\u00f3n Mac\u00edas","orcid":"https://orcid.org/0000-0003-2621-6806"},"institutions":[{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Ram\u00f3n Mac\u00edas","raw_affiliation_strings":["1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK"],"affiliations":[{"raw_affiliation_string":"1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067782609","display_name":"Juanjo Vega","orcid":null},"institutions":[{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Juanjo Vega","raw_affiliation_strings":["1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK"],"affiliations":[{"raw_affiliation_string":"1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046960969","display_name":"J.M. Carazo","orcid":"https://orcid.org/0000-0003-0788-8447"},"institutions":[{"id":"https://openalex.org/I2801331674","display_name":"St James's University Hospital","ror":"https://ror.org/013s89d74","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799390153","https://openalex.org/I2801331674"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Mar\u00eda Carazo","raw_affiliation_strings":["1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK"],"affiliations":[{"raw_affiliation_string":"1 GN7 of the National Institute for Bioinformatics (INB), 2Biocomputing Unit of the National Centre for Biotechnology (CNB-CSIC), Darwin, 3, 28049 Madrid, Spain and 3Computational Biology Group of the Leeds Institute of Molecular Medicine, Section of Experimental Therapeutics, Welcome Trust Brenner Building, St James's University Hospital, Leeds LS9 7TF, UK","institution_ids":["https://openalex.org/I2801331674"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081108161"],"corresponding_institution_ids":["https://openalex.org/I2801331674"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1303,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.5290844,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"28","issue":"3","first_page":"397","last_page":"402"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6731563806533813},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.618281364440918},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5497074127197266},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5477983951568604},{"id":"https://openalex.org/keywords/human-protein-atlas","display_name":"Human Protein Atlas","score":0.5176504254341125},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.48365795612335205},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.4117944836616516},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35382145643234253},{"id":"https://openalex.org/keywords/protein-expression","display_name":"Protein expression","score":0.3397185206413269},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2573709785938263}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6731563806533813},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.618281364440918},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5497074127197266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5477983951568604},{"id":"https://openalex.org/C158163496","wikidata":"https://www.wikidata.org/wiki/Q5937310","display_name":"Human Protein Atlas","level":4,"score":0.5176504254341125},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.48365795612335205},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.4117944836616516},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35382145643234253},{"id":"https://openalex.org/C6856738","wikidata":"https://www.wikidata.org/wiki/Q331672","display_name":"Protein expression","level":3,"score":0.3397185206413269},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2573709785938263},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006816","descriptor_name":"Huntington Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006816","descriptor_name":"Huntington Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006816","descriptor_name":"Huntington Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018507","descriptor_name":"Gene Expression Regulation, Developmental","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr639","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr639","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/397/48874345/bioinformatics_28_3_397.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22106336","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22106336","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr639","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr639","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/3/397/48874345/bioinformatics_28_3_397.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106238914.pdf","grobid_xml":"https://content.openalex.org/works/W2106238914.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1505011908","https://openalex.org/W1524554374","https://openalex.org/W1970357458","https://openalex.org/W1976209715","https://openalex.org/W2006896953","https://openalex.org/W2094678200","https://openalex.org/W2096525273","https://openalex.org/W2100471807","https://openalex.org/W2106223061","https://openalex.org/W2109108939","https://openalex.org/W2111530986","https://openalex.org/W2116015974","https://openalex.org/W2117941111","https://openalex.org/W2120965285","https://openalex.org/W2126867710","https://openalex.org/W2133045719","https://openalex.org/W2136887407","https://openalex.org/W2149480636","https://openalex.org/W2150233912","https://openalex.org/W2151524809","https://openalex.org/W2152545090","https://openalex.org/W2153349010","https://openalex.org/W2153691589","https://openalex.org/W2163685645","https://openalex.org/W2166419991","https://openalex.org/W2168005921","https://openalex.org/W2916247567","https://openalex.org/W4244606935","https://openalex.org/W4253759977","https://openalex.org/W6677841323"],"related_works":["https://openalex.org/W2011187995","https://openalex.org/W2314146950","https://openalex.org/W2373521488","https://openalex.org/W2582837249","https://openalex.org/W4388280821","https://openalex.org/W3131226936","https://openalex.org/W1971016193","https://openalex.org/W4200558169","https://openalex.org/W4283034207","https://openalex.org/W4286560581"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
