{"id":"https://openalex.org/W2146705459","doi":"https://doi.org/10.1093/bioinformatics/btr635","title":"Inferring sequence regions under functional divergence in duplicate genes","display_name":"Inferring sequence regions under functional divergence in duplicate genes","publication_year":2011,"publication_date":"2011-11-26","ids":{"openalex":"https://openalex.org/W2146705459","doi":"https://doi.org/10.1093/bioinformatics/btr635","mag":"2146705459","pmid":"https://pubmed.ncbi.nlm.nih.gov/22121158"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr635","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr635","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/176/48869990/bioinformatics_28_2_176.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/176/48869990/bioinformatics_28_2_176.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066663062","display_name":"Yi-Fei Huang","orcid":"https://orcid.org/0000-0001-5594-6731"},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Yi-Fei Huang","raw_affiliation_strings":["Department of Biology, McMaster University, Hamilton, ON, Canada","Department of Biology, McMaster University, Hamilton, ON, Canada,"],"affiliations":[{"raw_affiliation_string":"Department of Biology, McMaster University, Hamilton, ON, Canada","institution_ids":["https://openalex.org/I98251732"]},{"raw_affiliation_string":"Department of Biology, McMaster University, Hamilton, ON, Canada,","institution_ids":["https://openalex.org/I98251732"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047864197","display_name":"G. Brian Golding","orcid":null},"institutions":[{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"G. Brian Golding","raw_affiliation_strings":["Department of Biology, McMaster University, Hamilton, ON, Canada","Department of Biology, McMaster University, Hamilton, ON, Canada,"],"affiliations":[{"raw_affiliation_string":"Department of Biology, McMaster University, Hamilton, ON, Canada","institution_ids":["https://openalex.org/I98251732"]},{"raw_affiliation_string":"Department of Biology, McMaster University, Hamilton, ON, Canada,","institution_ids":["https://openalex.org/I98251732"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066663062"],"corresponding_institution_ids":["https://openalex.org/I98251732"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7817,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.71417763,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"28","issue":"2","first_page":"176","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/functional-divergence","display_name":"Functional divergence","score":0.7561128735542297},{"id":"https://openalex.org/keywords/divergence","display_name":"Divergence (linguistics)","score":0.6502924561500549},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6475109457969666},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.6179238557815552},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5858978033065796},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5624436140060425},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5000724792480469},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48138168454170227},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3661644458770752},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.19477808475494385},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10462898015975952}],"concepts":[{"id":"https://openalex.org/C103077935","wikidata":"https://www.wikidata.org/wiki/Q5508811","display_name":"Functional divergence","level":5,"score":0.7561128735542297},{"id":"https://openalex.org/C207390915","wikidata":"https://www.wikidata.org/wiki/Q1230525","display_name":"Divergence (linguistics)","level":2,"score":0.6502924561500549},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6475109457969666},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.6179238557815552},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5858978033065796},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5624436140060425},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5000724792480469},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48138168454170227},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3661644458770752},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.19477808475494385},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10462898015975952},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020131","descriptor_name":"Genes, Duplicate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020131","descriptor_name":"Genes, Duplicate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020131","descriptor_name":"Genes, Duplicate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr635","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr635","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/176/48869990/bioinformatics_28_2_176.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22121158","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22121158","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr635","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr635","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/2/176/48869990/bioinformatics_28_2_176.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146705459.pdf","grobid_xml":"https://content.openalex.org/works/W2146705459.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W420957490","https://openalex.org/W1508354498","https://openalex.org/W1767861649","https://openalex.org/W1829137581","https://openalex.org/W1927239524","https://openalex.org/W1957469265","https://openalex.org/W1967645030","https://openalex.org/W1970405699","https://openalex.org/W1972760976","https://openalex.org/W1981737570","https://openalex.org/W1984212762","https://openalex.org/W2017519756","https://openalex.org/W2017712270","https://openalex.org/W2019907599","https://openalex.org/W2025634059","https://openalex.org/W2041246993","https://openalex.org/W2051575557","https://openalex.org/W2055962554","https://openalex.org/W2059941787","https://openalex.org/W2071365663","https://openalex.org/W2088012478","https://openalex.org/W2089278448","https://openalex.org/W2092414509","https://openalex.org/W2096977241","https://openalex.org/W2100094101","https://openalex.org/W2102424972","https://openalex.org/W2103546861","https://openalex.org/W2107580421","https://openalex.org/W2109530915","https://openalex.org/W2115361560","https://openalex.org/W2119965520","https://openalex.org/W2123200842","https://openalex.org/W2124790653","https://openalex.org/W2127346557","https://openalex.org/W2132926880","https://openalex.org/W2135587043","https://openalex.org/W2137137210","https://openalex.org/W2140686653","https://openalex.org/W2143776567","https://openalex.org/W2145126338","https://openalex.org/W2148047088","https://openalex.org/W2163123197","https://openalex.org/W2163822406","https://openalex.org/W2166444569","https://openalex.org/W2169830295","https://openalex.org/W2170120409","https://openalex.org/W2337564029","https://openalex.org/W2412242336","https://openalex.org/W3214380909","https://openalex.org/W4230357098","https://openalex.org/W4236710418","https://openalex.org/W4245668478","https://openalex.org/W4285719527","https://openalex.org/W6654563908"],"related_works":["https://openalex.org/W2097460046","https://openalex.org/W2166212839","https://openalex.org/W2067460354","https://openalex.org/W2565683002","https://openalex.org/W2387304298","https://openalex.org/W2009414370","https://openalex.org/W2128301953","https://openalex.org/W1579430094","https://openalex.org/W1968617170","https://openalex.org/W2077068888"],"abstract_inverted_index":{"C++":[0],"source":[1],"codes":[2],"of":[3],"HMMDiverge":[4],"and":[5],"simulation":[6],"programs":[7],"used":[8],"in":[9],"this":[10],"study,":[11],"as":[12,14],"well":[13],"example":[15],"datasets,":[16],"are":[17],"available":[18],"at":[19],"http://info.mcmaster.ca/yifei/software/HMMDiverge.html.":[20]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
