{"id":"https://openalex.org/W2143700642","doi":"https://doi.org/10.1093/bioinformatics/btr633","title":"CellAnimation: an open source MATLAB framework for microscopy assays","display_name":"CellAnimation: an open source MATLAB framework for microscopy assays","publication_year":2011,"publication_date":"2011-11-24","ids":{"openalex":"https://openalex.org/W2143700642","doi":"https://doi.org/10.1093/bioinformatics/btr633","mag":"2143700642","pmid":"https://pubmed.ncbi.nlm.nih.gov/22121157"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr633","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr633","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/138/50568350/bioinformatics_28_1_138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/138/50568350/bioinformatics_28_1_138.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020981873","display_name":"Walter Georgescu","orcid":null},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Walter Georgescu","raw_affiliation_strings":["1 Vanderbilt Institute for Integrative Biosystems Research and Education, 2Department of Biomedical Engineering, Vanderbilt University, 3Center for Cancer Systems Biology at Vanderbilt, Vanderbilt University Medical Center, Nashville, TN, USA, 4Department of Molecular Physiology and Biophysics, 5Department of Physics and Astronomy, Vanderbilt University and 6Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN, USA"],"affiliations":[{"raw_affiliation_string":"1 Vanderbilt Institute for Integrative Biosystems Research and Education, 2Department of Biomedical Engineering, Vanderbilt University, 3Center for Cancer Systems Biology at Vanderbilt, Vanderbilt University Medical Center, Nashville, TN, USA, 4Department of Molecular Physiology and Biophysics, 5Department of Physics and Astronomy, Vanderbilt University and 6Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027130614","display_name":"John P. Wikswo","orcid":"https://orcid.org/0000-0003-2790-1530"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John P. Wikswo","raw_affiliation_strings":["1 Vanderbilt Institute for Integrative Biosystems Research and Education, 2Department of Biomedical Engineering, Vanderbilt University, 3Center for Cancer Systems Biology at Vanderbilt, Vanderbilt University Medical Center, Nashville, TN, USA, 4Department of Molecular Physiology and Biophysics, 5Department of Physics and Astronomy, Vanderbilt University and 6Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN, USA"],"affiliations":[{"raw_affiliation_string":"1 Vanderbilt Institute for Integrative Biosystems Research and Education, 2Department of Biomedical Engineering, Vanderbilt University, 3Center for Cancer Systems Biology at Vanderbilt, Vanderbilt University Medical Center, Nashville, TN, USA, 4Department of Molecular Physiology and Biophysics, 5Department of Physics and Astronomy, Vanderbilt University and 6Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003212140","display_name":"Vito Quaranta","orcid":"https://orcid.org/0000-0001-7491-8672"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vito Quaranta","raw_affiliation_strings":["1 Vanderbilt Institute for Integrative Biosystems Research and Education, 2Department of Biomedical Engineering, Vanderbilt University, 3Center for Cancer Systems Biology at Vanderbilt, Vanderbilt University Medical Center, Nashville, TN, USA, 4Department of Molecular Physiology and Biophysics, 5Department of Physics and Astronomy, Vanderbilt University and 6Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN, USA"],"affiliations":[{"raw_affiliation_string":"1 Vanderbilt Institute for Integrative Biosystems Research and Education, 2Department of Biomedical Engineering, Vanderbilt University, 3Center for Cancer Systems Biology at Vanderbilt, Vanderbilt University Medical Center, Nashville, TN, USA, 4Department of Molecular Physiology and Biophysics, 5Department of Physics and Astronomy, Vanderbilt University and 6Department of Cancer Biology, Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020981873"],"corresponding_institution_ids":["https://openalex.org/I901861585"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7132,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.82164414,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"28","issue":"1","first_page":"138","last_page":"139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8212812542915344},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6510400772094727},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6432450413703918},{"id":"https://openalex.org/keywords/unavailability","display_name":"Unavailability","score":0.5749160051345825},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5149803757667542},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5130962133407593},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.5022711753845215},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4789774417877197},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4672795534133911},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4355200529098511},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.4269038736820221},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.413136750459671},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.33031192421913147},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3175885081291199},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2510858178138733},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15816673636436462}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8212812542915344},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6510400772094727},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6432450413703918},{"id":"https://openalex.org/C2780505938","wikidata":"https://www.wikidata.org/wiki/Q17093282","display_name":"Unavailability","level":2,"score":0.5749160051345825},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5149803757667542},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5130962133407593},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.5022711753845215},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4789774417877197},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4672795534133911},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4355200529098511},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.4269038736820221},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.413136750459671},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.33031192421913147},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3175885081291199},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2510858178138733},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15816673636436462},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003584","descriptor_name":"Cytological Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003584","descriptor_name":"Cytological Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003584","descriptor_name":"Cytological Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr633","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr633","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/138/50568350/bioinformatics_28_1_138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22121157","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22121157","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2529799","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3244774","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3244774","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3244774","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr633","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr633","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/138/50568350/bioinformatics_28_1_138.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G6013845345","display_name":null,"funder_award_id":"U54CA113007","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320309151","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143700642.pdf","grobid_xml":"https://content.openalex.org/works/W2143700642.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1512337159","https://openalex.org/W1969924491","https://openalex.org/W2000396646","https://openalex.org/W2039808072","https://openalex.org/W2107554012","https://openalex.org/W2110347960","https://openalex.org/W2138825607","https://openalex.org/W2140099710","https://openalex.org/W2142002818","https://openalex.org/W6680497045"],"related_works":["https://openalex.org/W2380602769","https://openalex.org/W2103285227","https://openalex.org/W2034415517","https://openalex.org/W2370237957","https://openalex.org/W2102204645","https://openalex.org/W2377966044","https://openalex.org/W2360105452","https://openalex.org/W2388284732","https://openalex.org/W2443010930","https://openalex.org/W2143700642"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"available":[2],"at":[3],"Bioinformatics":[4],"online.":[5]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
