{"id":"https://openalex.org/W2142433873","doi":"https://doi.org/10.1093/bioinformatics/btr630","title":"Gene set analysis in the cloud","display_name":"Gene set analysis in the cloud","publication_year":2011,"publication_date":"2011-11-13","ids":{"openalex":"https://openalex.org/W2142433873","doi":"https://doi.org/10.1093/bioinformatics/btr630","mag":"2142433873","pmid":"https://pubmed.ncbi.nlm.nih.gov/22084254"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr630","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr630","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Lu Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144605","display_name":"Laboratoire National de Sant\u00e9","ror":"https://ror.org/04y798z66","country_code":"LU","type":"facility","lineage":["https://openalex.org/I4210144605"]}],"countries":["LU"],"is_corresponding":true,"raw_author_name":"Lu Zhang","raw_affiliation_strings":["1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg","institution_ids":["https://openalex.org/I4210144605"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Shengchang Gu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shengchang Gu","raw_affiliation_strings":["1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yuan Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuan Liu","raw_affiliation_strings":["1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010036792","display_name":"Bingqiang Wang","orcid":"https://orcid.org/0000-0002-8691-2523"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bingqiang Wang","raw_affiliation_strings":["1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050612781","display_name":"Francisco Azuaje","orcid":"https://orcid.org/0000-0002-9207-9072"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francisco Azuaje","raw_affiliation_strings":["1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China"],"affiliations":[{"raw_affiliation_string":"1 Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Cardiovascular research, CRP-Sant\u00e9, Luxembourg L-1150, Luxembourg and 2Bioinformatics Center, BGI, Shenzhen 518083, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210144605"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3897,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.8916091,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"28","issue":"2","first_page":"294","last_page":"295"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7556999921798706,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7556999921798706,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.17550000548362732,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.007300000172108412,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8670746088027954},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7306950092315674},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6023523807525635},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5758959650993347},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5566499829292297},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5142697691917419},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4853493273258209},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.4739810824394226},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4639875888824463},{"id":"https://openalex.org/keywords/amazon-rainforest","display_name":"Amazon rainforest","score":0.4323248267173767},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4271911382675171},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3788066506385803},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35538002848625183},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3440479636192322},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33289703726768494},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.20384711027145386},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12762880325317383},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12419670820236206},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08072221279144287}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8670746088027954},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7306950092315674},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6023523807525635},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5758959650993347},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5566499829292297},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5142697691917419},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4853493273258209},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.4739810824394226},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4639875888824463},{"id":"https://openalex.org/C535291247","wikidata":"https://www.wikidata.org/wiki/Q177567","display_name":"Amazon rainforest","level":2,"score":0.4323248267173767},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4271911382675171},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3788066506385803},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35538002848625183},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3440479636192322},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33289703726768494},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.20384711027145386},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12762880325317383},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12419670820236206},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08072221279144287},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr630","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr630","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22084254","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22084254","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W2043842514","https://openalex.org/W2055459874","https://openalex.org/W2075411161","https://openalex.org/W2130410032","https://openalex.org/W2164839434"],"related_works":["https://openalex.org/W2380602769","https://openalex.org/W3015770346","https://openalex.org/W1585501219","https://openalex.org/W1965108376","https://openalex.org/W2584935056","https://openalex.org/W2377966044","https://openalex.org/W2319583951","https://openalex.org/W1549018805","https://openalex.org/W2373126865","https://openalex.org/W2142433873"],"abstract_inverted_index":{"YunBe":[0],"is":[1],"open-source":[2],"and":[3,16],"freely":[4],"accessible":[5],"within":[6],"the":[7],"Amazon":[8],"Elastic":[9],"MapReduce":[10],"service":[11],"at":[12],"s3n://lrcv-crp-sante/app/yunbe.jar.":[13],"Source":[14],"code":[15],"user's":[17],"guidelines":[18],"can":[19],"be":[20],"downloaded":[21],"from":[22],"http://tinyurl.com/yunbedownload.":[23]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-03T08:47:05.690250","created_date":"2025-10-10T00:00:00"}