{"id":"https://openalex.org/W2117901689","doi":"https://doi.org/10.1093/bioinformatics/btr611","title":"A novel structural position-specific scoring matrix for the prediction of protein secondary structures","display_name":"A novel structural position-specific scoring matrix for the prediction of protein secondary structures","publication_year":2011,"publication_date":"2011-11-07","ids":{"openalex":"https://openalex.org/W2117901689","doi":"https://doi.org/10.1093/bioinformatics/btr611","mag":"2117901689","pmid":"https://pubmed.ncbi.nlm.nih.gov/22065541"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr611","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr611","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049145146","display_name":"Dapeng Li","orcid":"https://orcid.org/0000-0002-0749-0001"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dapeng Li","raw_affiliation_strings":["Department of Chemistry, Tongji University, Shanghai 200092, China","Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028953097","display_name":"Tonghua Li","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tonghua Li","raw_affiliation_strings":["Department of Chemistry, Tongji University, Shanghai 200092, China","Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100993325","display_name":"Peisheng Cong","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peisheng Cong","raw_affiliation_strings":["Department of Chemistry, Tongji University, Shanghai 200092, China","Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031748715","display_name":"Wenwei Xiong","orcid":"https://orcid.org/0000-0002-1790-7384"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenwei Xiong","raw_affiliation_strings":["Department of Chemistry, Tongji University, Shanghai 200092, China","Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048311287","display_name":"Jiangming Sun","orcid":"https://orcid.org/0000-0001-6814-1297"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangming Sun","raw_affiliation_strings":["Department of Chemistry, Tongji University, Shanghai 200092, China","Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Tongji University, Shanghai 200092, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Department of Chemistry ,Tongji University ,Shanghai,200092 ,China)","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5049145146"],"corresponding_institution_ids":["https://openalex.org/I116953780"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4333,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.81113191,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"28","issue":"1","first_page":"32","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.6386361122131348},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6138913631439209},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.5228091478347778},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.5113901495933533},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5032815337181091},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.4305569529533386},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42190930247306824},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4062980115413666},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2829684019088745},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.128068208694458}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.6386361122131348},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6138913631439209},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.5228091478347778},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5113901495933533},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5032815337181091},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.4305569529533386},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42190930247306824},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4062980115413666},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2829684019088745},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.128068208694458},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr611","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr611","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22065541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22065541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W89038067","https://openalex.org/W255996521","https://openalex.org/W1209932451","https://openalex.org/W1533153109","https://openalex.org/W1606410455","https://openalex.org/W1758266623","https://openalex.org/W1963550288","https://openalex.org/W1969007008","https://openalex.org/W1969474339","https://openalex.org/W1978520289","https://openalex.org/W1979826517","https://openalex.org/W1981622568","https://openalex.org/W1985818354","https://openalex.org/W1985854865","https://openalex.org/W1987328021","https://openalex.org/W1994831131","https://openalex.org/W1995773911","https://openalex.org/W2008708467","https://openalex.org/W2011069753","https://openalex.org/W2026649417","https://openalex.org/W2027837654","https://openalex.org/W2035066314","https://openalex.org/W2035334446","https://openalex.org/W2040881232","https://openalex.org/W2041369927","https://openalex.org/W2049695588","https://openalex.org/W2052078346","https://openalex.org/W2056958748","https://openalex.org/W2057157558","https://openalex.org/W2060178110","https://openalex.org/W2063148805","https://openalex.org/W2066370108","https://openalex.org/W2075651068","https://openalex.org/W2085789739","https://openalex.org/W2095450147","https://openalex.org/W2104887801","https://openalex.org/W2121651202","https://openalex.org/W2122181892","https://openalex.org/W2123333780","https://openalex.org/W2126871981","https://openalex.org/W2128801478","https://openalex.org/W2136068218","https://openalex.org/W2137259082","https://openalex.org/W2138929157","https://openalex.org/W2140678125","https://openalex.org/W2141915739","https://openalex.org/W2143092506","https://openalex.org/W2145468550","https://openalex.org/W2147880316","https://openalex.org/W2147905080","https://openalex.org/W2153187042","https://openalex.org/W2156125289","https://openalex.org/W2157046483","https://openalex.org/W2158714788","https://openalex.org/W2161732286","https://openalex.org/W2170441710","https://openalex.org/W6631881766","https://openalex.org/W6682082992"],"related_works":["https://openalex.org/W4206825711","https://openalex.org/W2928838901","https://openalex.org/W2494604670","https://openalex.org/W1578077690","https://openalex.org/W1998289425","https://openalex.org/W2303656598","https://openalex.org/W1510508486","https://openalex.org/W2094822546","https://openalex.org/W2470147982","https://openalex.org/W2141925828"],"abstract_inverted_index":{"lith@tongji.edu.cn":[0]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":4}],"updated_date":"2026-02-27T16:54:17.756197","created_date":"2025-10-10T00:00:00"}
